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STRUCTURE OF THE SINGLE-DOMAIN CAMELID ANTIBODY CAB-CA05
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BZQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 25 % (w/v) PEG8000,
0.1 M Na citrate pH 5.6,
protein concentration 1.7 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 37.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.98 α = 90 b = 43.86 β = 93.23 c = 87.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 1999-01-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 31 99.8 0.103 4.9 5.8 13523 13256 23.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 99.8 0.227 2.7 5.3 1878
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1BZQ 2.1 31 12819 12786 666 99.7 0.19 0.19 0.19 0.18 0.27 0.2246 5%, random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.5 p_staggered_tor 16.7 p_planar_tor 3.1 p_scangle_it 2.8 p_mcangle_it 2.71 p_scbond_it 1.73 p_mcbond_it 1.66 p_angle_d 0.027 p_planar_d 0.026 p_bond_d 0.009
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.5 p_staggered_tor 16.7 p_planar_tor 3.1 p_scangle_it 2.8 p_mcangle_it 2.71 p_scbond_it 1.73 p_mcbond_it 1.66 p_angle_d 0.027 p_planar_d 0.026 p_bond_d 0.009 p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1873 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling