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Crystal Structures of Human Gephyrin and Plant Cnx1 G domains - Comparative Analysis and Functional Implications
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.4 M SODIUM ACETATE 0.1 M SODIUM CACODYLATE, PH 6.5
Crystal Properties Matthews coefficient Solvent content 3.3 61.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.303 α = 90 b = 175.303 β = 90 c = 175.303 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH PLANAR MIRROR AND TOROIDAL MIRROR 2000-05-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.9790, 0.97940, 0.9500, 1.0448 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 27 90.8 0.062 4.7 2.7 47553
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 75.5 0.159 4.3 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 27 47553 2582 90.8 0.223 0.251 0.2315 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.403 r_scbond_it 3.655 r_angle_other_deg 2.499 r_mcangle_it 2.403 r_mcbond_it 1.272 r_dihedral_angle_3_deg 1.112 r_symmetry_vdw_refined 0.345 r_symmetry_vdw_other 0.285 r_nbd_refined 0.282 r_nbd_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.403 r_scbond_it 3.655 r_angle_other_deg 2.499 r_mcangle_it 2.403 r_mcbond_it 1.272 r_dihedral_angle_3_deg 1.112 r_symmetry_vdw_refined 0.345 r_symmetry_vdw_other 0.285 r_nbd_refined 0.282 r_nbd_other 0.25 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.131 r_bond_refined_d 0.032 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9450 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing