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Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E1Q PDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.61 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 267.2 α = 90 b = 107.2 β = 90 c = 135.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 1999-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 92.2 0.088 8.1 2.4 140093 36.405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 68.6 0.331 2.1 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE 2.4 20 140093 92.2 0.225 0.2039 0.281 RANDOM 58.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 15.7 p_scangle_it 3.59 p_scbond_it 2.62 p_planar_tor 2.6 p_mcangle_it 1.77 p_mcbond_it 1.0374 p_multtor_nbd 0.208 p_singtor_nbd 0.183 p_xyhbond_nbd 0.169
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 15.7 p_scangle_it 3.59 p_scbond_it 2.62 p_planar_tor 2.6 p_mcangle_it 1.77 p_mcbond_it 1.0374 p_multtor_nbd 0.208 p_singtor_nbd 0.183 p_xyhbond_nbd 0.169 p_chiral_restr 0.09 p_hb_or_metal_coord 0.044 p_planar_d 0.021 p_angle_d 0.016 p_plane_restr 0.015 p_bond_d 0.006 p_angle_deg p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25232 Nucleic Acid Atoms Solvent Atoms 911 Heterogen Atoms 175
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing