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Structure of OXA10 beta-lactamase at pH 8.3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E3U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.3 AMMONIUMS SULFATE 2.0 M, TRIS HCL 100 MM, PH 8.2-8.5
Crystal Properties Matthews coefficient Solvent content 2.53 0.561
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.279 α = 90 b = 82.436 β = 95.89 c = 101.165 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.54 84.4 0.086 12.3 3 86153 22.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.89 90.7 0.331 2.7 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1E3U 1.8 29.54 81683 4320 84.3 0.19831 0.1933 0.24271 RANDOM SAME SET AS MAD STRUCTURE 1E3U 22.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_staggered_tor 12.7 p_planar_tor 5.7 p_scangle_it 3.553 p_scbond_it 2.66 p_mcangle_it 1.363 p_mcbond_it 0.91 p_multtor_nbd 0.227 p_singtor_nbd 0.17 p_xyhbond_nbd 0.125
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_staggered_tor 12.7 p_planar_tor 5.7 p_scangle_it 3.553 p_scbond_it 2.66 p_mcangle_it 1.363 p_mcbond_it 0.91 p_multtor_nbd 0.227 p_singtor_nbd 0.17 p_xyhbond_nbd 0.125 p_chiral_restr 0.072 p_planar_d 0.019 p_angle_d 0.018 p_plane_restr 0.0074 p_bond_d 0.005 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7748 Nucleic Acid Atoms Solvent Atoms 943 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling