1E2U

Low Temperature Structure of Hybrid Cluster Protein from Desulfovibrio vulgaris to 1.6A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.9PROTEIN WAS CRYSTALLISED FROM 0.1M MES PH5.9, 60MM MAGNESIUM ACETATE AND 25-30% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.652.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.63α = 90
b = 64.68β = 90
c = 152.29γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1998-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX7.2SRSPX7.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.592091.30.0695.62.57744611.436
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.591.6887.70.16.52.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1E1D1.62072244381890.80.160.184RANDOM13.443
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.3
p_special_tor15
p_staggered_tor11.5
p_planar_tor3.3
p_scangle_it2.964
p_scbond_it2.12
p_mcangle_it1.79
p_mcbond_it1.323
p_chiral_restr0.094
p_planar_d0.023
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.3
p_special_tor15
p_staggered_tor11.5
p_planar_tor3.3
p_scangle_it2.964
p_scbond_it2.12
p_mcangle_it1.79
p_mcbond_it1.323
p_chiral_restr0.094
p_planar_d0.023
p_angle_d0.021
p_plane_restr0.0182
p_bond_d0.007
p_angle_deg
p_hb_or_metal_coord
p_singtor_nbd
p_multtor_nbd
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4218
Nucleic Acid Atoms
Solvent Atoms630
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing