1D26

EFFECT OF A SINGLE 3'-METHYLENE PHOSPHONATE LINKAGE ON THE CONFORMATION OF AN A-DNA OCTAMER DOUBLE HELIX


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS7277pH 7.00, MICRODIALYSIS, temperature 277.00K
Crystal Properties
Matthews coefficientSolvent content
2.3748.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.3α = 90
b = 43.3β = 90
c = 24.52γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayOSCILLATION CAMERAARNDT-WONACOTT
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X31EMBL/DESY, HAMBURGX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.12613031

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.126311970.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_bond_it4.81
n_phos_angle_it4.37
n_sugar_angle_it3.92
n_sugar_bond_it3.13
n_multtor_nbd0.208
n_singtor_nbd0.132
n_phos_bond_angle_d0.074
n_chiral_restr0.072
n_phos_bond_d0.055
n_sugar_bond_angle_d0.035
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_bond_it4.81
n_phos_angle_it4.37
n_sugar_angle_it3.92
n_sugar_bond_it3.13
n_multtor_nbd0.208
n_singtor_nbd0.132
n_phos_bond_angle_d0.074
n_chiral_restr0.072
n_phos_bond_d0.055
n_sugar_bond_angle_d0.035
n_plane_restr0.02
n_sugar_bond_d0.015
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms160
Solvent Atoms29
Heterogen Atoms1

Software

Software
Software NamePurpose
NUCLSQrefinement