1CEB

THE STRUCTURE OF THE NON-COVALENT COMPLEX OF RECOMBINANT KRINGLE 1 DOMAIN OF HUMAN PLASMINOGEN WITH AMCHA (TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9135.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.3α = 90
b = 51.7β = 90
c = 46.8γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295IMAGE PLATERIGAKU RAXIS IICM
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.06700.079512.670281
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.072.25560.141

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.07735900570.178
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor25
p_staggered_tor21.7
p_planar_tor3.7
p_scangle_it2.6
p_scbond_it2
p_mcangle_it1.4
p_mcbond_it1
p_multtor_nbd0.32
p_xhyhbond_nbd0.28
p_singtor_nbd0.23
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor25
p_staggered_tor21.7
p_planar_tor3.7
p_scangle_it2.6
p_scbond_it2
p_mcangle_it1.4
p_mcbond_it1
p_multtor_nbd0.32
p_xhyhbond_nbd0.28
p_singtor_nbd0.23
p_chiral_restr0.18
p_planar_d0.06
p_angle_d0.05
p_plane_restr0.03
p_bond_d0.02
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1278
Nucleic Acid Atoms
Solvent Atoms150
Heterogen Atoms22

Software

Software
Software NamePurpose
RAXISdata collection
PROLSQrefinement
R-AXISdata reduction