CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | TOCSY | 10% D2O/70% WATER/20% D3-TRIFLUOROETHANOL | 2.5 | 1 atm | 290 | |||
| 2 | NOESY | 10% D2O/70% WATER/20% D3-TRIFLUOROETHANOL | 2.5 | 1 atm | 290 | |||
| 3 | CT-NOESY | 10% D2O/70% WATER/20% D3-TRIFLUOROETHANOL | 2.5 | 1 atm | 290 | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AM | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry | THE 20 STRUCTURES WITH LOWEST TARGET FUNCTION FROM DIANA WERE ENERGY MINIMIZED IN THE AMBER FORCE FIELD USING 500 ITERATIONS STEEPEST DESCENT FOLLOWED BY 500 ITERATIONS CONJUGATE GRADIENT MINIMIZATION. | Discover |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST TARGET FUNCTION |
| Conformers Calculated Total Number | 500 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (n/a) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Discover | BIOSYM | |
| 2 | structure solution | UXNMR | ||
| 3 | structure solution | Pronto | ||
| 4 | structure solution | DIANA | ||
