X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16pH 6.0
Crystal Properties
Matthews coefficientSolvent content
1.940

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.731α = 90
b = 61.544β = 90
c = 30.083γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEFUJIMIRROR1993-06-25M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6APhoton FactoryBL-6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.35888.80.085810.5213039.02
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.351.4560.1823.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1PZA1.35821303108488.80.1760.1780.19RANDOM11.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.8
p_staggered_tor12.9
p_special_tor11.2
p_planar_tor4
p_scangle_it2.937
p_scbond_it1.912
p_mcangle_it1.7
p_mcbond_it1.137
p_multtor_nbd0.237
p_singtor_nbd0.168
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.8
p_staggered_tor12.9
p_special_tor11.2
p_planar_tor4
p_scangle_it2.937
p_scbond_it1.912
p_mcangle_it1.7
p_mcbond_it1.137
p_multtor_nbd0.237
p_singtor_nbd0.168
p_xyhbond_nbd0.132
p_chiral_restr0.109
p_planar_d0.026
p_plane_restr0.0225
p_angle_d0.022
p_bond_d0.008
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms913
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms1

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling