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HUMAN GLYOXALASE I Q33E, E172Q DOUBLE MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FRO PDB ENTRY 1FRO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 PROTEIN WAS CRYSTALLISED FROM PEG 2000 MONOMETHLY ETHER 50 MM MES PH 5.8, 0.1M NACL
Crystal Properties Matthews coefficient Solvent content 2 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.28 α = 90 b = 67.28 β = 90 c = 164.73 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 1997-03-23 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 89.7 0.048 27 3.5 33195 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 63.1 0.128 5.5 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT PDB ENTRY 1FRO 2.2 30 33193 1679 89.7 0.19 0.18 0.1797 0.25 RANDOM 16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 35.6 p_staggered_tor 17.8 p_scangle_it 3.772 p_planar_tor 3.7 p_scbond_it 3.036 p_mcangle_it 1.525 p_mcbond_it 1.035 p_multtor_nbd 0.233 p_xyhbond_nbd 0.179 p_singtor_nbd 0.177
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 35.6 p_staggered_tor 17.8 p_scangle_it 3.772 p_planar_tor 3.7 p_scbond_it 3.036 p_mcangle_it 1.525 p_mcbond_it 1.035 p_multtor_nbd 0.233 p_xyhbond_nbd 0.179 p_singtor_nbd 0.177 p_chiral_restr 0.108 p_planar_d 0.031 p_angle_d 0.03 p_plane_restr 0.021 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5702 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 108
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling