1ATG

AZOTOBACTER VINELANDII PERIPLASMIC MOLYBDATE-BINDING PROTEIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4291HANGING DROP VAPOUR DIFFUSION WITH PROTEIN CONCENTRATION IN THE RANGE 10-15 MG/ML IN 10MM TRIS-HCL PH 7.0. 1 OR 2 MICROLITER DROPS OF THE LATTER WERE MIXED WITH AN EQUAL VOLUME OF 11-14% (W/V) PEG 4000 AND 0.4M AMMONIUM SULFATE IN 0.1M ACETATE BUFFER AT PH 4.0, AND THEN EQUILIBRATED AGAINST THIS SOLUTION AT 18 DEG C. CRYOPROTECTED USING THE SAME SOLUTION CONTAINING 25% (V/V) ETHYLENE GLYCOL., vapor diffusion - hanging drop, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.5451

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.934α = 90
b = 88.802β = 93.55
c = 41.746γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS1996-09-19M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.210099.40.09412.73.774061
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.21.2299.10.1616.93.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSINGLE ISOMORPHOUS REPLACEMENT WITH ANOMALOUS SCATTERINGTHROUGHOUT1.24074061373099.40.16440.183RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.7
p_staggered_tor13.8
p_planar_tor4
p_scangle_it3.171
p_scbond_it2.304
p_mcangle_it1.627
p_mcbond_it1.164
p_multtor_nbd0.246
p_plane_restr0.225
p_singtor_nbd0.165
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.7
p_staggered_tor13.8
p_planar_tor4
p_scangle_it3.171
p_scbond_it2.304
p_mcangle_it1.627
p_mcbond_it1.164
p_multtor_nbd0.246
p_plane_restr0.225
p_singtor_nbd0.165
p_xyhbond_nbd0.148
p_chiral_restr0.08
p_planar_d0.026
p_angle_d0.02
p_bond_d0.007
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1721
Nucleic Acid Atoms
Solvent Atoms355
Heterogen Atoms22

Software

Software
Software NamePurpose
VARIOUSmodel building
DMmodel building
Omodel building
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CCP4phasing
DMphasing
OTHERS)phasing