1A7W

CRYSTAL STRUCTURE OF THE HISTONE HMFB FROM METHANOTHERMUS FERVIDUS


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.551

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 31.3α = 90
b = 61.58β = 90
c = 39.65γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMAR scanner 300 mm plateSUPPER NI-COATED MIRROR SYSTEM1995-02-19M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.939.195.90.0530.0538.34.1615222.87
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9797.20.1960.1963.73.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTAFTER RIGID BODY REFINEMENTPARTIALLY REFINED ORTHORHOMBIC HMFA1.55181079752097.40.20.1980.248RANDOM25.34
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.3981.398-2.69
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.7
p_scangle_it5.241
p_transverse_tor4.5
p_planar_tor3.9
p_scbond_it3.426
p_mcangle_it2.676
p_mcbond_it1.932
p_multtor_nbd0.3
p_xhyhbond_nbd0.3
p_xyhbond_nbd0.3
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.7
p_scangle_it5.241
p_transverse_tor4.5
p_planar_tor3.9
p_scbond_it3.426
p_mcangle_it2.676
p_mcbond_it1.932
p_multtor_nbd0.3
p_xhyhbond_nbd0.3
p_xyhbond_nbd0.3
p_singtor_nbd0.178
p_chiral_restr0.161
p_planar_d0.047
p_angle_d0.039
p_plane_restr0.0242
p_bond_d0.022
p_angle_deg
p_hb_or_metal_coord
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms527
Nucleic Acid Atoms
Solvent Atoms46
Heterogen Atoms2

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
CCP4data scaling
SCALAdata scaling