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FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) R96L DELETION MUTANT ON VARIANT FOR CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VFA PDB ENTRY 1VFA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.38 48.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.423 α = 90 b = 90.423 β = 90 c = 56.661 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 269 IMAGE PLATE MARRESEARCH 1992-06-10 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 17.23 95.1 0.084 7 15419 27.64
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 86.3 0.329 5.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1VFA 2 6 15419 15419 0.167 0.1723 26.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 20.2 p_special_tor 15 p_transverse_tor 12.1 p_scangle_it 4.304 p_scbond_it 2.95 p_planar_tor 2.42 p_mcangle_it 2.164 p_mcbond_it 1.37 p_xyhbond_nbd 0.2 p_multtor_nbd 0.199
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 20.2 p_special_tor 15 p_transverse_tor 12.1 p_scangle_it 4.304 p_scbond_it 2.95 p_planar_tor 2.42 p_mcangle_it 2.164 p_mcbond_it 1.37 p_xyhbond_nbd 0.2 p_multtor_nbd 0.199 p_singtor_nbd 0.168 p_chiral_restr 0.12 p_planar_d 0.051 p_angle_d 0.05 p_bond_d 0.015 p_plane_restr 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1694 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction AGROVATA/ROTAVATA data reduction ALMN/CCP4 model building CCP4 refinement Agrovata data scaling ROTAVATA data scaling CCP4 phasing