196D

CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP278VAPOR DIFFUSION, SITTING DROP, temperature 278.00K
Crystal Properties
Matthews coefficientSolvent content
2.0339.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.23α = 90
b = 24.32β = 126.78
c = 40.83γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93IMAGE PLATERIGAKU RAXIS II
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7874946

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.78249460.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it5.106
n_phos_bond_it4.587
n_sugar_angle_it4.141
n_sugar_bond_it3.632
n_chiral_restr0.166
n_multtor_nbd0.103
n_singtor_nbd0.087
n_phos_bond_angle_d0.045
n_phos_bond_d0.037
n_sugar_bond_angle_d0.036
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it5.106
n_phos_bond_it4.587
n_sugar_angle_it4.141
n_sugar_bond_it3.632
n_chiral_restr0.166
n_multtor_nbd0.103
n_singtor_nbd0.087
n_phos_bond_angle_d0.045
n_phos_bond_d0.037
n_sugar_bond_angle_d0.036
n_sugar_bond_d0.021
n_plane_restr0.021
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms404
Solvent Atoms82
Heterogen Atoms38

Software

Software
Software NamePurpose
NUCLSQrefinement