187D

HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7pH 7.00, VAPOR DIFFUSION
Crystal Properties
Matthews coefficientSolvent content
2.448.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.36α = 90
b = 43.36β = 90
c = 24.83γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray288DIFFRACTOMETERNICOLET
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.25828160.134
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it2.317
n_sugar_angle_it2.25
n_sugar_bond_it1.438
n_phos_bond_it1.292
n_multtor_nbd0.16
n_singtor_nbd0.129
n_phos_bond_angle_d0.034
n_angle_d0.019
n_phos_bond_d0.013
n_chiral_restr0.01
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it2.317
n_sugar_angle_it2.25
n_sugar_bond_it1.438
n_phos_bond_it1.292
n_multtor_nbd0.16
n_singtor_nbd0.129
n_phos_bond_angle_d0.034
n_angle_d0.019
n_phos_bond_d0.013
n_chiral_restr0.01
n_plane_restr0.007
n_bond_d0.006
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_sugar_bond_d
n_sugar_bond_angle_d
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms161
Solvent Atoms39
Heterogen Atoms

Software

Software
Software NamePurpose
NUCLSQrefinement