14ZW | pdb_000014zw

Crystal Structure of FtsZ with Z228587394


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-935VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.464α = 90
b = 88.464β = 90
c = 179.604γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-935ftsz-935x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-935SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.92NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-9352.09144.2321000.2650.2760.0760.9957.913.346888
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-9352.0912.1271001.9482.0350.5850.33612.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.09144.27146873238999.9420.1930.19150.19850.22780.233234.329
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0450.0220.045-0.145
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.513
r_dihedral_angle_6_deg14.457
r_lrange_it8.438
r_lrange_other8.387
r_dihedral_angle_2_deg7.196
r_scangle_it6.823
r_scangle_other6.822
r_dihedral_angle_1_deg6.816
r_scbond_it4.368
r_scbond_other4.367
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.513
r_dihedral_angle_6_deg14.457
r_lrange_it8.438
r_lrange_other8.387
r_dihedral_angle_2_deg7.196
r_scangle_it6.823
r_scangle_other6.822
r_dihedral_angle_1_deg6.816
r_scbond_it4.368
r_scbond_other4.367
r_mcangle_it4.251
r_mcangle_other4.25
r_mcbond_it2.8
r_mcbond_other2.794
r_angle_refined_deg1.641
r_angle_other_deg0.591
r_symmetry_nbd_other0.482
r_symmetry_nbd_refined0.223
r_nbd_refined0.221
r_nbd_other0.205
r_xyhbond_nbd_refined0.188
r_nbtor_refined0.171
r_symmetry_xyhbond_nbd_refined0.167
r_symmetry_nbtor_other0.112
r_chiral_restr0.075
r_symmetry_xyhbond_nbd_other0.044
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction