14ZB | pdb_000014zb

Crystal Structure of FtsZ with Z89307993


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-741VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.837α = 90
b = 88.837β = 90
c = 179.388γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-741ftsz-741x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-741SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-7412.04943.1161000.2490.2590.0710.9968.813.350212
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-7412.0492.0841002.3572.4550.6820.34912.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.04943.15450200253399.9440.1840.18230.18990.21690.22434.018
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0030.0010.003-0.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.406
r_dihedral_angle_6_deg14.094
r_dihedral_angle_2_deg9.551
r_lrange_it8.484
r_lrange_other8.448
r_scangle_it7.082
r_scangle_other7.081
r_dihedral_angle_1_deg6.496
r_scbond_it4.57
r_scbond_other4.569
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.406
r_dihedral_angle_6_deg14.094
r_dihedral_angle_2_deg9.551
r_lrange_it8.484
r_lrange_other8.448
r_scangle_it7.082
r_scangle_other7.081
r_dihedral_angle_1_deg6.496
r_scbond_it4.57
r_scbond_other4.569
r_mcangle_it4.261
r_mcangle_other4.261
r_mcbond_it2.875
r_mcbond_other2.874
r_angle_refined_deg1.674
r_angle_other_deg0.576
r_symmetry_nbd_other0.399
r_symmetry_xyhbond_nbd_refined0.266
r_nbd_refined0.217
r_nbd_other0.196
r_xyhbond_nbd_refined0.195
r_symmetry_nbd_refined0.173
r_nbtor_refined0.169
r_symmetry_nbtor_other0.112
r_chiral_restr0.077
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4218
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction