14YS | pdb_000014ys

Crystal Structure of FtsZ with Z19735192

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-690	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.51	51.01

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 87.681	α = 90
b = 87.681	β = 90
c = 175.553	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-690	ftsz-690	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-690	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-690	2.565	43.84	98.4	0.328	0.342	0.094	0.991	7.1	13		24042

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-690	2.565	2.609		100	2.474	2.57	0.69	0.324		13.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.565	43.879	24002	1206	98.18	0.169	0.165	0.1703	0.235	0.2322	46.667

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.006	0.003		0.006		-0.019

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.966
r_dihedral_angle_6_deg	14.005
r_lrange_it	11.01
r_lrange_other	10.848
r_dihedral_angle_2_deg	10.153
r_scangle_it	8.188
r_scangle_other	8.186
r_dihedral_angle_1_deg	6.906
r_mcangle_other	5.958
r_mcangle_it	5.957
r_scbond_it	5.119
r_scbond_other	5.118
r_mcbond_it	3.713
r_mcbond_other	3.711
r_angle_refined_deg	1.503
r_angle_other_deg	0.572
r_symmetry_nbd_other	0.486
r_symmetry_xyhbond_nbd_refined	0.326
r_xyhbond_nbd_refined	0.236
r_nbd_refined	0.223
r_symmetry_nbd_refined	0.212
r_nbd_other	0.187
r_nbtor_refined	0.17
r_symmetry_xyhbond_nbd_other	0.167
r_symmetry_nbtor_other	0.112
r_chiral_restr	0.066
r_bond_refined_d	0.006
r_bond_other_d	0.005
r_gen_planes_refined	0.005
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	308
Heterogen Atoms	23

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction