14YJ | pdb_000014yj

Crystal Structure of FtsZ with Z1400796579


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-643VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6253.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.572α = 90
b = 88.572β = 90
c = 179.64γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-643ftsz-643x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-643SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920051NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-6431.92942.9991000.1740.180.0490.99811.213.359847
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-6431.9291.9621002.0652.1470.5850.3913.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.92943.03659843303199.9630.180.17870.18620.21190.217233.382
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.008-0.004-0.0080.026
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.356
r_dihedral_angle_6_deg14.248
r_lrange_it8.824
r_lrange_other8.803
r_dihedral_angle_2_deg8.637
r_scangle_it7.486
r_scangle_other7.485
r_dihedral_angle_1_deg6.597
r_scbond_it4.94
r_scbond_other4.939
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.356
r_dihedral_angle_6_deg14.248
r_lrange_it8.824
r_lrange_other8.803
r_dihedral_angle_2_deg8.637
r_scangle_it7.486
r_scangle_other7.485
r_dihedral_angle_1_deg6.597
r_scbond_it4.94
r_scbond_other4.939
r_mcangle_other4.221
r_mcangle_it4.22
r_mcbond_it2.949
r_mcbond_other2.944
r_angle_refined_deg1.785
r_angle_other_deg0.653
r_symmetry_nbd_other0.462
r_symmetry_xyhbond_nbd_refined0.274
r_nbd_other0.258
r_symmetry_nbd_refined0.236
r_nbd_refined0.218
r_xyhbond_nbd_refined0.188
r_symmetry_xyhbond_nbd_other0.173
r_nbtor_refined0.168
r_symmetry_nbtor_other0.117
r_chiral_restr0.084
r_chiral_restr_other0.061
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction