14XJ | pdb_000014xj

Crystal Structure of FtsZ with Z438067480


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-512VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.557α = 90
b = 88.557β = 90
c = 178.25γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-512ftsz-512x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-512SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-5121.85744.2781000.2410.250.0680.9978.113.466484
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-5121.8571.8891003.0753.1940.8590.33413.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.85744.31866475337999.9530.1850.18350.19060.21140.218329.673
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.003-0.002-0.0030.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.62
r_dihedral_angle_3_deg14.446
r_lrange_it8.163
r_lrange_other8.102
r_dihedral_angle_2_deg7.082
r_scangle_it6.975
r_scangle_other6.974
r_dihedral_angle_1_deg6.404
r_scbond_it4.474
r_scbond_other4.474
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.62
r_dihedral_angle_3_deg14.446
r_lrange_it8.163
r_lrange_other8.102
r_dihedral_angle_2_deg7.082
r_scangle_it6.975
r_scangle_other6.974
r_dihedral_angle_1_deg6.404
r_scbond_it4.474
r_scbond_other4.474
r_mcangle_it3.903
r_mcangle_other3.902
r_mcbond_it2.701
r_mcbond_other2.698
r_angle_refined_deg1.741
r_angle_other_deg0.632
r_symmetry_nbd_other0.488
r_symmetry_xyhbond_nbd_refined0.287
r_nbd_refined0.221
r_nbd_other0.208
r_symmetry_nbd_refined0.178
r_nbtor_refined0.169
r_xyhbond_nbd_refined0.167
r_symmetry_nbtor_other0.125
r_symmetry_xyhbond_nbd_other0.102
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4247
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction