14XH | pdb_000014xh

Crystal Structure of FtsZ with Z26823525


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-507VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.583α = 90
b = 88.583β = 90
c = 178.837γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-507ftsz-507x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-507SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-5071.99242.9931000.210.2180.060.9979.813.354092
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-5071.9922.0271002.5262.6270.720.3613.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.99243.0354081271599.9570.1790.17730.18570.21050.218435.269
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.004-0.002-0.0040.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.982
r_dihedral_angle_6_deg14.02
r_lrange_it8.853
r_lrange_other8.826
r_dihedral_angle_2_deg8.111
r_scangle_it7.751
r_scangle_other7.749
r_dihedral_angle_1_deg6.503
r_scbond_it5.009
r_scbond_other5.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.982
r_dihedral_angle_6_deg14.02
r_lrange_it8.853
r_lrange_other8.826
r_dihedral_angle_2_deg8.111
r_scangle_it7.751
r_scangle_other7.749
r_dihedral_angle_1_deg6.503
r_scbond_it5.009
r_scbond_other5.008
r_mcangle_other4.438
r_mcangle_it4.437
r_mcbond_it3.071
r_mcbond_other3.067
r_angle_refined_deg1.709
r_angle_other_deg0.612
r_symmetry_nbd_other0.404
r_symmetry_xyhbond_nbd_refined0.257
r_nbd_refined0.219
r_nbd_other0.179
r_xyhbond_nbd_refined0.175
r_nbtor_refined0.168
r_symmetry_nbd_refined0.162
r_symmetry_nbtor_other0.111
r_chiral_restr0.079
r_symmetry_xyhbond_nbd_other0.053
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction