14WY | pdb_000014wy

Crystal Structure of FtsZ with F9994-0329


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-47VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.523α = 90
b = 88.523β = 90
c = 178.418γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-47ftsz-47x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-47SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-472.00244.2621000.1790.1860.0510.9981113.353091
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-472.0022.0371001.9812.0610.5680.36213.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.00244.30153085267999.9640.1820.180.18740.21680.222136.035
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.0010.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.114
r_dihedral_angle_6_deg13.308
r_lrange_it9.037
r_lrange_other9.009
r_dihedral_angle_2_deg8.873
r_scangle_it7.719
r_scangle_other7.717
r_dihedral_angle_1_deg6.57
r_scbond_it5.039
r_scbond_other5.038
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.114
r_dihedral_angle_6_deg13.308
r_lrange_it9.037
r_lrange_other9.009
r_dihedral_angle_2_deg8.873
r_scangle_it7.719
r_scangle_other7.717
r_dihedral_angle_1_deg6.57
r_scbond_it5.039
r_scbond_other5.038
r_mcangle_it4.636
r_mcangle_other4.636
r_mcbond_it3.131
r_mcbond_other3.126
r_angle_refined_deg1.683
r_angle_other_deg0.624
r_symmetry_nbd_other0.463
r_symmetry_xyhbond_nbd_refined0.29
r_nbd_refined0.218
r_nbd_other0.202
r_xyhbond_nbd_refined0.19
r_symmetry_xyhbond_nbd_other0.176
r_symmetry_nbd_refined0.172
r_nbtor_refined0.167
r_symmetry_nbtor_other0.111
r_xyhbond_nbd_other0.099
r_chiral_restr0.081
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction