14WX | pdb_000014wx

Crystal Structure of FtsZ with Z906021418

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-467	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.61	52.93

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.603	α = 90
b = 88.603	β = 90
c = 178.904	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-467	ftsz-467	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-467	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-467	1.861	44.301	100	0.166	0.172	0.047	0.999	11.2	13.3		66419

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-467	1.861	1.893		100	2.283	2.372	0.639	0.369		13.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.861	44.341	66412	3372	99.97	0.182	0.1806	0.1887	0.2099	0.2167	31.845

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.003	-0.002		-0.003		0.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.886
r_dihedral_angle_3_deg	14.634
r_dihedral_angle_2_deg	9.97
r_lrange_it	8.527
r_lrange_other	8.499
r_scangle_it	7.335
r_scangle_other	7.334
r_dihedral_angle_1_deg	6.599
r_scbond_it	4.818
r_scbond_other	4.817
r_mcangle_it	4.209
r_mcangle_other	4.209
r_mcbond_it	2.933
r_mcbond_other	2.931
r_angle_refined_deg	1.758
r_angle_other_deg	0.613
r_symmetry_nbd_other	0.497
r_nbd_refined	0.22
r_nbd_other	0.219
r_xyhbond_nbd_refined	0.177
r_nbtor_refined	0.169
r_symmetry_xyhbond_nbd_refined	0.137
r_symmetry_nbd_refined	0.136
r_symmetry_nbtor_other	0.108
r_chiral_restr	0.084
r_symmetry_xyhbond_nbd_other	0.045
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	307
Heterogen Atoms	18

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction