14WV | pdb_000014wv

Crystal Structure of FtsZ with Z100642432

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-464	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.62	53.06

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.651	α = 90
b = 88.651	β = 90
c = 179.205	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-464	ftsz-464	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-464	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-464	1.931	44.326	100	0.207	0.215	0.059	0.998	10.5	13.3		59616

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-464	1.931	1.964		100	2.575	2.678	0.732	0.373		13.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.931	44.365	59607	3016	99.956	0.182	0.1804	0.1883	0.2133	0.2192	32.213

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.004	0.002		0.004		-0.014

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	15.976
r_dihedral_angle_3_deg	14.698
r_dihedral_angle_6_deg	14.349
r_lrange_it	8.808
r_lrange_other	8.753
r_scangle_it	7.234
r_scangle_other	7.233
r_dihedral_angle_1_deg	6.698
r_scbond_it	4.671
r_scbond_other	4.659
r_mcangle_it	4.081
r_mcangle_other	4.081
r_mcbond_it	2.809
r_mcbond_other	2.807
r_angle_refined_deg	1.738
r_angle_other_deg	0.658
r_symmetry_nbd_other	0.562
r_symmetry_nbd_refined	0.364
r_symmetry_xyhbond_nbd_refined	0.226
r_nbd_refined	0.221
r_xyhbond_nbd_refined	0.198
r_nbd_other	0.187
r_nbtor_refined	0.169
r_symmetry_nbtor_other	0.122
r_chiral_restr	0.083
r_symmetry_xyhbond_nbd_other	0.038
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.006
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	308
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction