14WN | pdb_000014wn

Crystal Structure of FtsZ with F6672-1327


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-43VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6252.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.739α = 90
b = 88.739β = 90
c = 178.54γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-43ftsz-43x-ray100PIXELDECTRIS EIGER X 9MKB2025-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-43SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.920194NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-431.90644.3691000.170.1770.0490.9991113.361925
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-431.9061.9381002.5432.6440.7210.30913.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.90644.40961913312299.9740.1830.18150.18950.21390.22135.279
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.0010.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.581
r_dihedral_angle_6_deg14.527
r_dihedral_angle_2_deg8.966
r_lrange_it8.848
r_lrange_other8.811
r_scangle_it7.703
r_scangle_other7.701
r_dihedral_angle_1_deg6.647
r_scbond_it5.038
r_scbond_other5.037
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.581
r_dihedral_angle_6_deg14.527
r_dihedral_angle_2_deg8.966
r_lrange_it8.848
r_lrange_other8.811
r_scangle_it7.703
r_scangle_other7.701
r_dihedral_angle_1_deg6.647
r_scbond_it5.038
r_scbond_other5.037
r_mcangle_it4.461
r_mcangle_other4.461
r_mcbond_it3.118
r_mcbond_other3.115
r_angle_refined_deg1.714
r_angle_other_deg0.591
r_symmetry_nbd_other0.436
r_symmetry_xyhbond_nbd_refined0.299
r_nbd_refined0.218
r_nbd_other0.191
r_xyhbond_nbd_refined0.184
r_symmetry_nbd_refined0.173
r_nbtor_refined0.168
r_symmetry_nbtor_other0.111
r_symmetry_xyhbond_nbd_other0.085
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction