14WJ | pdb_000014wj

Crystal Structure of FtsZ with Z31408124


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-421VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.676α = 90
b = 88.676β = 90
c = 179.87γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-421ftsz-421x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-421SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-4212.04944.3381000.2110.2190.060.9986.713.450138
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-4212.0492.0841002.5462.6520.7410.3612.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.04944.37750120253199.9320.1810.17920.18640.21110.217937.367
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0120.0060.012-0.039
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.618
r_dihedral_angle_3_deg14.603
r_lrange_it8.708
r_lrange_other8.686
r_scangle_it7.467
r_scangle_other7.466
r_dihedral_angle_1_deg6.488
r_dihedral_angle_2_deg6.408
r_scbond_it4.866
r_scbond_other4.865
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.618
r_dihedral_angle_3_deg14.603
r_lrange_it8.708
r_lrange_other8.686
r_scangle_it7.467
r_scangle_other7.466
r_dihedral_angle_1_deg6.488
r_dihedral_angle_2_deg6.408
r_scbond_it4.866
r_scbond_other4.865
r_mcangle_other4.515
r_mcangle_it4.514
r_mcbond_it3.124
r_mcbond_other3.123
r_angle_refined_deg1.647
r_angle_other_deg0.588
r_symmetry_nbd_other0.441
r_nbd_refined0.22
r_symmetry_xyhbond_nbd_refined0.196
r_xyhbond_nbd_refined0.189
r_nbd_other0.182
r_symmetry_nbd_refined0.178
r_nbtor_refined0.169
r_symmetry_nbtor_other0.129
r_symmetry_xyhbond_nbd_other0.088
r_chiral_restr0.076
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction