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Crystal Structure of FtsZ with Z111782404
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-407 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.62 53.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.627 α = 90 b = 88.627 β = 90 c = 179.14 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-407 ftsz-407 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-407 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-407 2.444 43.017 99.4 0.255 0.265 0.072 0.997 7 13.6 29270
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-407 2.444 2.486 100 2.589 2.689 0.724 0.337 13.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.444 43.054 29264 1479 99.358 0.177 0.1744 0.178 0.2348 0.2347 48.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.023 -0.012 -0.023 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.578 r_dihedral_angle_3_deg 15.844 r_dihedral_angle_6_deg 13.125 r_lrange_it 10.703 r_lrange_other 10.523 r_scangle_it 7.559 r_scangle_other 7.558 r_dihedral_angle_1_deg 7.055 r_mcangle_it 5.894 r_mcangle_other 5.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.578 r_dihedral_angle_3_deg 15.844 r_dihedral_angle_6_deg 13.125 r_lrange_it 10.703 r_lrange_other 10.523 r_scangle_it 7.559 r_scangle_other 7.558 r_dihedral_angle_1_deg 7.055 r_mcangle_it 5.894 r_mcangle_other 5.894 r_scbond_it 4.635 r_scbond_other 4.635 r_mcbond_it 3.667 r_mcbond_other 3.666 r_angle_refined_deg 1.537 r_angle_other_deg 0.671 r_symmetry_nbd_other 0.652 r_symmetry_xyhbond_nbd_refined 0.273 r_nbd_refined 0.225 r_nbd_other 0.217 r_xyhbond_nbd_refined 0.204 r_symmetry_nbd_refined 0.202 r_symmetry_xyhbond_nbd_other 0.19 r_nbtor_refined 0.171 r_symmetry_nbtor_other 0.157 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction