14VY | pdb_000014vy

Crystal Structure of FtsZ with Z1983897532

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-395	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.26

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.026	α = 90
b = 89.026	β = 90
c = 178.45	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-395	ftsz-395	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-395	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-395	2.033	43.19	99.5	0.312	0.326	0.09	0.985	7.6	13		51039

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-395	2.033	2.068		100	3.4	3.539	0.98	0.695		12.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.041	43.227	47899	2424	94.356	0.205	0.2026	0.2094	0.2428	0.246	35.01

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.003	-0.001		-0.003		0.009

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.777
r_dihedral_angle_6_deg	14.522
r_dihedral_angle_2_deg	9.475
r_lrange_it	9.29
r_lrange_other	9.232
r_scangle_it	7.883
r_scangle_other	7.882
r_dihedral_angle_1_deg	6.598
r_scbond_it	5.17
r_scbond_other	5.168
r_mcangle_it	4.839
r_mcangle_other	4.839
r_mcbond_other	3.281
r_mcbond_it	3.267
r_angle_refined_deg	1.841
r_angle_other_deg	0.6
r_symmetry_xyhbond_nbd_refined	0.309
r_symmetry_nbd_refined	0.221
r_nbd_refined	0.218
r_symmetry_nbd_other	0.193
r_nbd_other	0.185
r_xyhbond_nbd_refined	0.18
r_nbtor_refined	0.172
r_symmetry_nbtor_other	0.085
r_chiral_restr	0.081
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	305
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction