14VW | pdb_000014vw

Crystal Structure of FtsZ with Z385450668

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q1X	initial MR model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
ftsz-387	VAPOR DIFFUSION, SITTING DROP	5	294	0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.

Crystal Properties
Matthews coefficient	Solvent content
2.67	53.97

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.002	α = 90
b = 89.002	β = 90
c = 181.32	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
ftsz-387	ftsz-387	x-ray	100	PIXEL	DECTRIS EIGER X 9M	KB	2025-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
ftsz-387	SYNCHROTRON	NSLS-II BEAMLINE 17-ID-1	0.919764	NSLS-II	17-ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
ftsz-387	2.287	44.501	100	0.267	0.277	0.076	0.996	8.4	13.5		36596

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
ftsz-387	2.287	2.327		100	3.082	3.206	0.878	0.346		13.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.287	44.541	36577	1922	99.899	0.183	0.1806	0.1857	0.2337	0.232	46.505

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.011	-0.006		-0.011		0.036

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.06
r_dihedral_angle_6_deg	13.906
r_lrange_it	10.281
r_lrange_other	10.24
r_scangle_it	8.101
r_scangle_other	8.1
r_dihedral_angle_1_deg	6.927
r_dihedral_angle_2_deg	6.493
r_mcangle_other	5.609
r_mcangle_it	5.608
r_scbond_it	5.176
r_scbond_other	5.175
r_mcbond_it	3.622
r_mcbond_other	3.619
r_angle_refined_deg	1.479
r_angle_other_deg	0.54
r_symmetry_nbd_other	0.451
r_symmetry_xyhbond_nbd_refined	0.252
r_nbd_refined	0.222
r_nbd_other	0.195
r_symmetry_nbd_refined	0.187
r_xyhbond_nbd_refined	0.176
r_nbtor_refined	0.169
r_symmetry_xyhbond_nbd_other	0.161
r_symmetry_nbtor_other	0.113
r_chiral_restr	0.07
r_bond_refined_d	0.007
r_gen_planes_refined	0.005
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4230
Nucleic Acid Atoms
Solvent Atoms	308
Heterogen Atoms	19

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
XDS	data reduction
DIMPLE	phasing
PHASER	phasing
Coot	model building
gemmi	data extraction