14VO | pdb_000014vo

Crystal Structure of FtsZ with Z19733482


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-318VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.568α = 90
b = 88.568β = 90
c = 178.797γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-318ftsz-318x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-318SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-3182.16844.2841000.2850.2960.080.9958.613.441951
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-3182.1682.2061002.4462.5410.6860.32613.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.16844.32341945217199.9430.1790.17680.18420.21910.221536.109
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.0010.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.801
r_dihedral_angle_6_deg14.076
r_lrange_it8.589
r_lrange_other8.514
r_dihedral_angle_2_deg7.52
r_scangle_it6.992
r_scangle_other6.991
r_dihedral_angle_1_deg6.476
r_scbond_it4.476
r_scbond_other4.475
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.801
r_dihedral_angle_6_deg14.076
r_lrange_it8.589
r_lrange_other8.514
r_dihedral_angle_2_deg7.52
r_scangle_it6.992
r_scangle_other6.991
r_dihedral_angle_1_deg6.476
r_scbond_it4.476
r_scbond_other4.475
r_mcangle_it4.391
r_mcangle_other4.391
r_mcbond_it2.928
r_mcbond_other2.92
r_angle_refined_deg1.593
r_angle_other_deg0.6
r_symmetry_nbd_other0.496
r_symmetry_xyhbond_nbd_refined0.273
r_nbd_refined0.218
r_nbd_other0.192
r_xyhbond_nbd_refined0.188
r_nbtor_refined0.168
r_symmetry_nbd_refined0.157
r_symmetry_nbtor_other0.115
r_symmetry_xyhbond_nbd_other0.104
r_chiral_restr0.074
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction