14VJ | pdb_000014vj

Crystal Structure of FtsZ with F3222-5456


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-294VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.5852.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.356α = 90
b = 88.356β = 90
c = 177.715γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-294ftsz-294x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-294SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2941.97944.1781000.2390.2480.0670.997913.354575
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2941.9792.0131002.5442.6450.7160.38813.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.97944.21754559274299.9320.180.17880.18640.21120.214532.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0020.0010.002-0.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.018
r_dihedral_angle_6_deg14.211
r_lrange_it8.777
r_lrange_other8.722
r_dihedral_angle_2_deg7.625
r_scangle_it7.248
r_scangle_other7.247
r_dihedral_angle_1_deg6.47
r_scbond_it4.666
r_scbond_other4.665
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.018
r_dihedral_angle_6_deg14.211
r_lrange_it8.777
r_lrange_other8.722
r_dihedral_angle_2_deg7.625
r_scangle_it7.248
r_scangle_other7.247
r_dihedral_angle_1_deg6.47
r_scbond_it4.666
r_scbond_other4.665
r_mcangle_it4.313
r_mcangle_other4.312
r_mcbond_it2.898
r_mcbond_other2.895
r_angle_refined_deg1.707
r_angle_other_deg0.637
r_symmetry_nbd_other0.55
r_nbd_refined0.222
r_nbd_other0.207
r_symmetry_xyhbond_nbd_refined0.204
r_xyhbond_nbd_refined0.193
r_symmetry_nbd_refined0.18
r_nbtor_refined0.168
r_symmetry_nbtor_other0.12
r_chiral_restr0.08
r_symmetry_xyhbond_nbd_other0.049
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction