14VG | pdb_000014vg

Crystal Structure of FtsZ with F6546-1623


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-268VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6453.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.813α = 90
b = 88.813β = 90
c = 180.224γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-268ftsz-268x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-268SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2682.16144.40799.80.2840.2950.0820.9967.812.942827
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2682.1612.19899.33.2553.3850.9280.34813.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.16144.44642349217298.6030.1770.17510.18340.21610.22240.159
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.003-0.001-0.0030.009
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.517
r_dihedral_angle_6_deg14.303
r_lrange_it10.138
r_lrange_other10.046
r_scangle_it8.439
r_scangle_other8.437
r_dihedral_angle_2_deg7.23
r_dihedral_angle_1_deg6.586
r_scbond_it5.594
r_scbond_other5.593
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.517
r_dihedral_angle_6_deg14.303
r_lrange_it10.138
r_lrange_other10.046
r_scangle_it8.439
r_scangle_other8.437
r_dihedral_angle_2_deg7.23
r_dihedral_angle_1_deg6.586
r_scbond_it5.594
r_scbond_other5.593
r_mcangle_other5.417
r_mcangle_it5.415
r_mcbond_other3.672
r_mcbond_it3.656
r_angle_refined_deg1.828
r_angle_other_deg0.599
r_symmetry_nbd_refined0.253
r_nbd_refined0.224
r_xyhbond_nbd_refined0.222
r_symmetry_xyhbond_nbd_refined0.204
r_symmetry_nbd_other0.197
r_nbd_other0.178
r_nbtor_refined0.173
r_symmetry_nbtor_other0.087
r_chiral_restr0.081
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms312
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction