14VF | pdb_000014vf

Crystal Structure of FtsZ with F2156-0066


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-247VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.69α = 90
b = 88.69β = 90
c = 179.64γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-247ftsz-247x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-247SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2472.12744.3451000.260.270.0730.9967.513.544771
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2472.1272.1641002.3122.4060.6640.35213

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.12744.38444756227999.9370.180.17790.1850.21720.222937.685
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.007-0.003-0.0070.021
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.224
r_dihedral_angle_6_deg14.093
r_lrange_it8.942
r_lrange_other8.844
r_scangle_it7.419
r_scangle_other7.418
r_dihedral_angle_2_deg6.902
r_dihedral_angle_1_deg6.61
r_scbond_it4.817
r_scbond_other4.815
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.224
r_dihedral_angle_6_deg14.093
r_lrange_it8.942
r_lrange_other8.844
r_scangle_it7.419
r_scangle_other7.418
r_dihedral_angle_2_deg6.902
r_dihedral_angle_1_deg6.61
r_scbond_it4.817
r_scbond_other4.815
r_mcangle_it4.514
r_mcangle_other4.513
r_mcbond_it3.041
r_mcbond_other3.041
r_angle_refined_deg1.633
r_angle_other_deg0.609
r_symmetry_nbd_other0.493
r_symmetry_xyhbond_nbd_refined0.294
r_nbd_refined0.225
r_symmetry_nbd_refined0.22
r_xyhbond_nbd_refined0.219
r_nbd_other0.212
r_nbtor_refined0.169
r_symmetry_xyhbond_nbd_other0.143
r_symmetry_nbtor_other0.105
r_chiral_restr0.074
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction