14VA | pdb_000014va

Crystal Structure of FtsZ with F2683-0098


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-221VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.5α = 90
b = 88.5β = 90
c = 178.552γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-221ftsz-221x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-221SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2212.10444.251000.2840.2950.080.9927.213.445774
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2212.1042.141002.3082.4090.6870.36512.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.10444.28945770233599.9590.1790.17660.18450.21640.220334.523
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.005-0.002-0.0050.015
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.635
r_dihedral_angle_6_deg14.369
r_dihedral_angle_2_deg8.697
r_lrange_it8.512
r_lrange_other8.449
r_scangle_it7.306
r_scangle_other7.305
r_dihedral_angle_1_deg6.514
r_scbond_it4.689
r_scbond_other4.688
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.635
r_dihedral_angle_6_deg14.369
r_dihedral_angle_2_deg8.697
r_lrange_it8.512
r_lrange_other8.449
r_scangle_it7.306
r_scangle_other7.305
r_dihedral_angle_1_deg6.514
r_scbond_it4.689
r_scbond_other4.688
r_mcangle_other4.27
r_mcangle_it4.269
r_mcbond_it2.846
r_mcbond_other2.84
r_angle_refined_deg1.681
r_angle_other_deg0.632
r_symmetry_nbd_other0.46
r_symmetry_xyhbond_nbd_refined0.225
r_nbd_refined0.218
r_xyhbond_nbd_refined0.211
r_nbd_other0.189
r_nbtor_refined0.167
r_symmetry_nbd_refined0.162
r_symmetry_nbtor_other0.111
r_chiral_restr0.078
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction