14UX | pdb_000014ux

Crystal Structure of FtsZ with F2124-0068


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-203VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.645α = 90
b = 88.645β = 90
c = 179.732γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-203ftsz-203x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-203SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-2032.05243.0331000.2340.2430.0670.9978.513.449876
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-2032.0522.0871002.4162.5170.7030.33912.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.05143.0749870252099.970.1820.17980.1870.2140.220634.89
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.0050.01-0.032
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_other_2_deg20.578
r_dihedral_angle_3_deg15.827
r_dihedral_angle_6_deg14.484
r_lrange_it8.752
r_lrange_other8.683
r_dihedral_angle_2_deg7.788
r_scangle_it7.228
r_scangle_other7.227
r_dihedral_angle_1_deg6.817
r_scbond_it4.685
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_other_2_deg20.578
r_dihedral_angle_3_deg15.827
r_dihedral_angle_6_deg14.484
r_lrange_it8.752
r_lrange_other8.683
r_dihedral_angle_2_deg7.788
r_scangle_it7.228
r_scangle_other7.227
r_dihedral_angle_1_deg6.817
r_scbond_it4.685
r_scbond_other4.683
r_mcangle_other4.192
r_mcangle_it4.191
r_mcbond_it2.786
r_mcbond_other2.782
r_angle_refined_deg1.692
r_angle_other_deg0.647
r_symmetry_nbd_other0.467
r_symmetry_xyhbond_nbd_other0.364
r_symmetry_xyhbond_nbd_refined0.225
r_nbd_refined0.223
r_symmetry_nbd_refined0.208
r_nbd_other0.204
r_xyhbond_nbd_refined0.2
r_nbtor_refined0.168
r_symmetry_nbtor_other0.108
r_chiral_restr0.081
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms309
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction