14UQ | pdb_000014uq

Crystal Structure of FtsZ with F6300-0026


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-149VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6353.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.735α = 90
b = 88.735β = 90
c = 179.639γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-149ftsz-149x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-149SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1492.14743.0731000.3010.3130.0860.9956.613.443604
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1492.1472.1841002.4252.520.6850.34713.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.14743.1143592223799.9450.1880.18580.19290.22530.227236.077
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0170.0080.017-0.055
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.554
r_dihedral_angle_6_deg14.108
r_dihedral_angle_2_deg9.372
r_lrange_it8.56
r_lrange_other8.494
r_scangle_it6.886
r_scangle_other6.885
r_dihedral_angle_1_deg6.72
r_mcangle_it4.488
r_mcangle_other4.488
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.554
r_dihedral_angle_6_deg14.108
r_dihedral_angle_2_deg9.372
r_lrange_it8.56
r_lrange_other8.494
r_scangle_it6.886
r_scangle_other6.885
r_dihedral_angle_1_deg6.72
r_mcangle_it4.488
r_mcangle_other4.488
r_scbond_it4.474
r_scbond_other4.474
r_mcbond_it2.993
r_mcbond_other2.991
r_angle_refined_deg1.604
r_angle_other_deg0.596
r_symmetry_nbd_other0.51
r_symmetry_xyhbond_nbd_refined0.226
r_symmetry_xyhbond_nbd_other0.223
r_nbd_refined0.22
r_nbd_other0.208
r_xyhbond_nbd_refined0.185
r_symmetry_nbd_refined0.183
r_nbtor_refined0.168
r_symmetry_nbtor_other0.118
r_chiral_restr0.075
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction