14UL | pdb_000014ul

Crystal Structure of FtsZ with F0537-0331


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-124VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.592α = 90
b = 88.592β = 90
c = 178.099γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-124ftsz-124x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-124SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1241.97244.2961000.2070.2150.0590.9989.213.355533
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1241.9722.0061002.5662.6680.7310.34313.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.97244.33555524278299.9550.1820.18020.18810.21170.218834.642
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0020.0010.002-0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.712
r_dihedral_angle_3_deg14.315
r_dihedral_angle_2_deg14.254
r_lrange_it8.531
r_lrange_other8.445
r_scangle_it7.201
r_scangle_other7.2
r_dihedral_angle_1_deg6.294
r_scbond_it4.606
r_scbond_other4.606
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.712
r_dihedral_angle_3_deg14.315
r_dihedral_angle_2_deg14.254
r_lrange_it8.531
r_lrange_other8.445
r_scangle_it7.201
r_scangle_other7.2
r_dihedral_angle_1_deg6.294
r_scbond_it4.606
r_scbond_other4.606
r_mcangle_it4.302
r_mcangle_other4.302
r_mcbond_other2.865
r_mcbond_it2.854
r_angle_refined_deg1.607
r_angle_other_deg0.53
r_symmetry_xyhbond_nbd_refined0.279
r_nbd_refined0.211
r_symmetry_nbd_other0.189
r_xyhbond_nbd_refined0.179
r_nbd_other0.169
r_nbtor_refined0.168
r_symmetry_nbd_refined0.15
r_symmetry_nbtor_other0.083
r_chiral_restr0.074
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction