14UJ | pdb_000014uj

Crystal Structure of FtsZ with F6608-1120


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-122VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6252.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.593α = 90
b = 88.593β = 90
c = 179.129γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-122ftsz-122x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-122SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1222.10343.0011000.260.270.0740.9977.513.446094
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1222.1032.1391001.952.0350.5780.37812.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.10343.03846043234399.870.1950.19330.19930.23170.236737.408
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0250.0120.025-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.998
r_dihedral_angle_6_deg14.179
r_lrange_it8.718
r_lrange_other8.692
r_dihedral_angle_2_deg7.15
r_scangle_it6.98
r_scangle_other6.979
r_dihedral_angle_1_deg6.668
r_mcangle_other4.722
r_mcangle_it4.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.998
r_dihedral_angle_6_deg14.179
r_lrange_it8.718
r_lrange_other8.692
r_dihedral_angle_2_deg7.15
r_scangle_it6.98
r_scangle_other6.979
r_dihedral_angle_1_deg6.668
r_mcangle_other4.722
r_mcangle_it4.72
r_scbond_it4.527
r_scbond_other4.527
r_mcbond_it3.108
r_mcbond_other3.108
r_angle_refined_deg1.627
r_angle_other_deg0.581
r_symmetry_nbd_other0.462
r_symmetry_nbd_refined0.293
r_symmetry_xyhbond_nbd_other0.265
r_symmetry_xyhbond_nbd_refined0.226
r_nbd_refined0.225
r_nbd_other0.223
r_xyhbond_nbd_other0.204
r_xyhbond_nbd_refined0.193
r_nbtor_refined0.17
r_symmetry_nbtor_other0.107
r_chiral_restr0.076
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4215
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction