Experiment: 10FV

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7UY0

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	298.15	0.1 M trisodium citrate pH 5.5, 2.5 M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.26	45.5

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M	kb bent focusing mirror	2021-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 23-ID-D	1.0	APS	23-ID-D

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	42.65	100	0.029	0.041	0.029	0.999	9.7	1.9		16998

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.84	100		0.621	0.879	0.621	0.485	1.1	2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.8	42.65	16987	883	99.959	0.196	0.1944	0.1927	0.2331	0.2293	RANDOM	45.797

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.24		-0.39	-1.105		2.327

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.516
r_dihedral_angle_6_deg	12.6
r_dihedral_angle_2_deg	9.063
r_dihedral_angle_1_deg	7.496
r_lrange_other	7.409
r_lrange_it	7.373
r_scangle_it	4.968
r_scangle_other	4.965
r_scbond_it	3.419
r_scbond_other	3.417

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.516
r_dihedral_angle_6_deg	12.6
r_dihedral_angle_2_deg	9.063
r_dihedral_angle_1_deg	7.496
r_lrange_other	7.409
r_lrange_it	7.373
r_scangle_it	4.968
r_scangle_other	4.965
r_scbond_it	3.419
r_scbond_other	3.417
r_mcangle_it	3.103
r_mcangle_other	3.102
r_mcbond_it	2.164
r_mcbond_other	2.151
r_angle_refined_deg	1.629
r_angle_other_deg	0.571
r_symmetry_nbd_refined	0.232
r_nbd_other	0.219
r_symmetry_nbd_other	0.201
r_nbd_refined	0.195
r_nbtor_refined	0.192
r_symmetry_xyhbond_nbd_refined	0.163
r_xyhbond_nbd_refined	0.116
r_symmetry_nbtor_other	0.087
r_chiral_restr	0.08
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1251
Nucleic Acid Atoms
Solvent Atoms	34
Heterogen Atoms	77

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

10FV | pdb_000010fv