MA_MAT3VR3033

Predicted interaction between ARID1A (1641-2285) and SMARCD1 (130-515)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Homo sapiens (Human) SMARCD1 (Q96GM5; 130 - 515)	protein binding binding signaling receptor binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding transcription coactivator activity	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of chromosome segregation regulation of cell cycle phase transition regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process regulation of cell cycle process chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition organelle organization mitotic cell cycle process regulation of sister chromatid segregation nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition developmental process regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of myoblast differentiation muscle structure development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of myoblast differentiation myoblast differentiation RNA metabolic process positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling transcription initiation at RNA polymerase II promoter regulation of biosynthetic process epigenetic regulation of gene expression gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process DNA-templated transcription initiation regulation of gene expression biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process multicellular organismal process regulation of stem cell population maintenance stem cell population maintenance positive regulation of stem cell population maintenance positive regulation of multicellular organismal process regulation of multicellular organismal process maintenance of cell number cellular component disassembly protein-containing complex organization protein-DNA complex disassembly protein-containing complex disassembly protein-DNA complex organization nucleosome disassembly nucleosome organization cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation nucleotide-excision repair regulation of nucleotide-excision repair multicellular organism development nervous system development system development regulation of G0 to G1 transition G0 to G1 transition regulation of RNA metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription response to lipid response to fatty acid response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid negative regulation of developmental process negative regulation of biological process negative regulation of cellular process negative regulation of cell differentiation regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of cell activation T cell activation positive regulation of leukocyte activation T cell differentiation regulation of immune system process positive regulation of immune system process positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion leukocyte differentiation cell development positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immune system process regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix RSC-type complex ATPase complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix RSC-type complex ATPase complex protein-containing complex catalytic complex nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome membraneless organelle SWI/SNF superfamily-type complex brahma complex GBAF complex SWI/SNF complex nucleoplasm nBAF complex chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome npBAF complex
A	Homo sapiens (Human) ARID1A (O14497; 1641 - 2285)	transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity DNA binding binding nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding DNA-binding transcription factor binding	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of chromosome segregation regulation of cell cycle phase transition regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process regulation of cell cycle process chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition organelle organization mitotic cell cycle process regulation of sister chromatid segregation nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition developmental process regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of myoblast differentiation muscle structure development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of myoblast differentiation myoblast differentiation RNA metabolic process positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling transcription initiation at RNA polymerase II promoter regulation of biosynthetic process epigenetic regulation of gene expression gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process DNA-templated transcription initiation regulation of gene expression biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process multicellular organismal process regulation of stem cell population maintenance stem cell population maintenance positive regulation of stem cell population maintenance positive regulation of multicellular organismal process regulation of multicellular organismal process maintenance of cell number cellular component disassembly protein-containing complex organization protein-DNA complex disassembly protein-containing complex disassembly protein-DNA complex organization nucleosome disassembly nucleosome organization nucleotide-excision repair regulation of nucleotide-excision repair multicellular organism development nervous system development system development positive regulation of DNA-templated transcription regulation of RNA metabolic process regulation of RNA biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription regulation of G0 to G1 transition G0 to G1 transition regulation of transcription by RNA polymerase II regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of cell activation T cell activation positive regulation of leukocyte activation T cell differentiation regulation of immune system process positive regulation of immune system process positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion leukocyte differentiation cell development positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immune system process regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle membraneless organelle SWI/SNF superfamily-type complex brahma complex SWI/SNF complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen bBAF complex nBAF complex npBAF complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR003121	SWIB/MDM2 domain	Domain
B	IPR038041	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domain	Domain
B	IPR036885	SWIB/MDM2 domain superfamily	Homologous Superfamily
B	IPR019835	SWIB domain	Domain
A	IPR030094	AT-rich interactive domain-containing protein 1A, ARID/BRIGHT DNA binding domain	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR001606	ARID DNA-binding domain	Domain
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR021906	SWI/SNF-like complex subunit BAF250/Osa	Family
A	IPR033388	SWI/SNF-like complex subunit BAF250, C-terminal	Domain
A	IPR036431	ARID DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q96GM5	atypical teratoid rhabdoid tumor colorectal cancer intellectual disability malignant glioma medulloblastoma primitive neuroectodermal tumor breast adenocarcinoma glioblastoma large cell medulloblastoma malignant mesothelioma Neoplasm of uncertain or unknown behavior of breast psoriasis breast carcinoma hypertensive disorder lung cancer atypical teratoid rhabdoid tumor colorectal cancer intellectual disability malignant glioma medulloblastoma primitive neuroectodermal tumor breast adenocarcinoma glioblastoma large cell medulloblastoma malignant mesothelioma Neoplasm of uncertain or unknown behavior of breast psoriasis breast carcinoma hypertensive disorder lung cancer osteosarcoma
A	Pharos: O14497	Coffin-Siris syndrome cholangiocarcinoma nasopharyngeal carcinoma Burkitt lymphoma esophageal adenocarcinoma urinary bladder cancer neuroblastoma transitional cell carcinoma prostate cancer granular cell carcinoma intrahepatic cholangiocarcinoma tubular adenocarcinoma endometrial carcinoma primary cutaneous T-cell non-Hodgkin lymphoma adenocarcinoma Coffin-Siris syndrome cholangiocarcinoma nasopharyngeal carcinoma Burkitt lymphoma esophageal adenocarcinoma urinary bladder cancer neuroblastoma transitional cell carcinoma prostate cancer granular cell carcinoma intrahepatic cholangiocarcinoma tubular adenocarcinoma endometrial carcinoma primary cutaneous T-cell non-Hodgkin lymphoma adenocarcinoma salivary gland adenoid cystic carcinoma adenoid cystic carcinoma intellectual disability T-cell non-Hodgkin lymphoma kidney Wilms tumor cancer colorectal cancer Microsatellite Instability Sezary syndrome intellectual disability, autosomal dominant 14 cribriform carcinoma endometrial cancer osteosarcoma endometriosis plasma cell myeloma gastric cancer acute myeloid leukemia hereditary diffuse gastric adenocarcinoma subependymal giant cell astrocytoma astrocytic tumor bile duct cancer lymphoplasmacytic lymphoma metabolic syndrome X cribriform carcinoma of breast gastric neoplasm granulomatous slack skin disease atypical teratoid rhabdoid tumor breast adenocarcinoma lung cancer malignant ependymoma Emery-Dreifuss muscular dystrophy ovarian disease primitive neuroectodermal tumor glioblastoma psoriasis hepatocellular carcinoma large cell medulloblastoma urinary bladder neoplasm breast carcinoma malignant glioma colorectal carcinoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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