AF_AFP28797F1

Computed structure model of Progranulin

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Progranulin	protein binding binding protein-folding chaperone binding molecular function activator activity signaling receptor binding molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	cellular response to stimulus multicellular organismal process regulation of cellular process response to stimulus cell projection organization positive regulation of neuron projection regeneration regulation of cellular response to stress neuron projection development regeneration neuron projection regeneration positive regulation of developmental process multicellular organism development neuron differentiation cell differentiation anatomical structure development cellular response to stimulus multicellular organismal process regulation of cellular process response to stimulus cell projection organization positive regulation of neuron projection regeneration regulation of cellular response to stress neuron projection development regeneration neuron projection regeneration positive regulation of developmental process multicellular organism development neuron differentiation cell differentiation anatomical structure development positive regulation of cell projection organization response to wounding system development positive regulation of response to wounding developmental process regulation of biological process regulation of axon regeneration regulation of cell projection organization response to external stimulus nervous system development generation of neurons regulation of response to stimulus regulation of neuron projection regeneration regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process cellular developmental process regulation of response to external stimulus positive regulation of biological process cell development response to axon injury regulation of response to wounding positive regulation of response to stimulus cellular component organization neurogenesis positive regulation of response to external stimulus cellular response to stress axon regeneration positive regulation of neuron projection development regulation of response to stress response to stress cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization biological regulation axon development neuron development cellular process positive regulation of axon regeneration regulation of plasma membrane bounded cell projection organization regulation of protein stability regulation of biological quality protein stabilization sensory organ development eye development animal organ development retina development in camera-type eye visual system development camera-type eye development sensory system development primary metabolic process gene expression macromolecule biosynthetic process protein maturation positive regulation of protein folding protein folding biosynthetic process regulation of protein folding metabolic process protein metabolic process macromolecule metabolic process regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of proteolysis proteolysis positive regulation of macromolecule metabolic process positive regulation of aspartic-type peptidase activity regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of proteolysis regulation of metabolic process neuron apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process positive regulation of neuron apoptotic process programmed cell death regulation of neuron apoptotic process maintenance of synapse structure cell junction maintenance cell junction organization cellular component maintenance synapse organization homeostatic process intracellular pH reduction regulation of intracellular pH lysosome organization vacuolar acidification lysosomal lumen acidification intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of lysosomal lumen pH regulation of cellular pH intracellular monoatomic ion homeostasis vacuole organization lytic vacuole organization organelle organization cellular homeostasis chemical homeostasis regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to biotic stimulus defense response to bacterium positive regulation of defense response to bacterium response to bacterium response to external biotic stimulus regulation of defense response to bacterium defense response response to other organism positive regulation of defense response catabolic process protein catabolic process in the vacuole lysosomal protein catabolic process protein catabolic process macromolecule catabolic process positive regulation of locomotion regulation of cell motility endothelial cell migration positive regulation of cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration regulation of endothelial cell migration cell migration cell motility locomotion macrophage activation involved in immune response immune response cell activation cell activation involved in immune response myeloid leukocyte activation myeloid cell activation involved in immune response leukocyte activation immune effector process macrophage activation microglial cell activation involved in immune response immune system process leukocyte activation involved in inflammatory response leukocyte activation involved in immune response microglial cell activation inflammatory response glial cell activation neuroinflammatory response regulation of macrophage activation negative regulation of inflammatory response regulation of leukocyte activation negative regulation of biological process regulation of cell activation regulation of neuroinflammatory response negative regulation of cellular process regulation of immune system process regulation of multicellular organismal process negative regulation of response to stimulus regulation of inflammatory response negative regulation of microglial cell activation negative regulation of cell activation negative regulation of immune system process negative regulation of response to external stimulus negative regulation of defense response regulation of microglial cell activation negative regulation of multicellular organismal process negative regulation of neuroinflammatory response negative regulation of leukocyte activation negative regulation of macrophage activation negative regulation of response to biotic stimulus innate immune response regulation of innate immune response negative regulation of immune response defense response to symbiont defense response to other organism regulation of immune response negative regulation of innate immune response cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation chordate embryonic development embryo development in utero embryonic development hatching embryo development ending in birth or egg hatching blastocyst hatching organism emergence from protective structure blastocyst development negative regulation of neuron apoptotic process negative regulation of programmed cell death negative regulation of apoptotic process behavior locomotory behavior exploration behavior locomotory exploration behavior multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process neutrophil activation regulation of neutrophil activation negative regulation of neutrophil activation granulocyte activation developmental growth growth trophectodermal cell proliferation blastocyst growth angiogenesis regulation of vasculature development tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport lysosomal transport establishment of localization regulation of growth regulation of developmental growth positive regulation of trophectodermal cell proliferation regulation of trophectodermal cell proliferation regulation of immune effector process regulation of cell differentiation regulation of cell development regulation of respiratory burst involved in inflammatory response respiratory burst involved in defense response negative regulation of metabolic process negative regulation of immune effector process respiratory burst involved in inflammatory response negative regulation of respiratory burst involved in inflammatory response negative regulation of respiratory burst regulation of respiratory burst production of molecular mediator involved in inflammatory response respiratory burst positive regulation of inflammatory response regulation of inflammatory response to wounding positive regulation of inflammatory response to wounding inflammatory response to wounding astrocyte differentiation astrocyte activation glial cell development astrocyte development gliogenesis astrocyte activation involved in immune response central nervous system development glial cell differentiation positive regulation of organelle organization positive regulation of vacuole organization regulation of vacuole organization regulation of organelle organization regulation of lysosome organization positive regulation of lysosome organization	cellular anatomical structure membrane vacuolar membrane membrane-bounded organelle intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane cytoplasm cellular anatomical structure membrane vacuolar membrane membrane-bounded organelle intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane cytoplasm organelle membrane lysosome Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network extracellular region extracellular space cerebellar climbing fiber to Purkinje cell synapse neuron to neuron synapse synapse cell junction asymmetric synapse glutamatergic synapse excitatory synapse asymmetric, glutamatergic, excitatory synapse vesicle cell periphery plasma membrane endosome intracellular vesicle cytoplasmic vesicle late endosome endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000118	Granulin	Domain
A	IPR039036	Granulin family	Family
A	IPR037277	Granulin superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.