AF_AFP02462F1

Computed structure model of Collagen alpha-1(IV) chain

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Collagen alpha-1(IV) chain	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength platelet-derived growth factor binding protein binding binding growth factor binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development branching morphogenesis of an epithelial tube angiogenesis tube morphogenesis epithelial tube morphogenesis developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development branching morphogenesis of an epithelial tube angiogenesis tube morphogenesis epithelial tube morphogenesis blood vessel development epithelium development blood vessel morphogenesis tube development morphogenesis of an epithelium tissue development vasculature development circulatory system development branching involved in blood vessel morphogenesis anatomical structure morphogenesis tissue morphogenesis morphogenesis of a branching structure anatomical structure formation involved in morphogenesis morphogenesis of a branching epithelium renal system development renal tubule development renal tubule morphogenesis cellular response to acid chemical cellular response to stimulus cellular response to amino acid stimulus response to acid chemical cellular response to chemical stimulus response to stimulus response to chemical cellular process response to amino acid collagen-activated tyrosine kinase receptor signaling pathway regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction collagen-activated signaling pathway enzyme-linked receptor protein signaling pathway cellular component organization cell junction organization neuromuscular junction development synapse organization cellular component organization or biogenesis cellular developmental process cell differentiation epithelial cell differentiation sensory organ development retina vasculature development in camera-type eye eye development retina development in camera-type eye visual system development retina vasculature morphogenesis in camera-type eye camera-type eye development retinal blood vessel morphogenesis sensory system development collagen fibril organization extracellular matrix organization extracellular structure organization external encapsulating structure organization basement membrane organization	membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region basement membrane extracellular matrix external encapsulating structure complex of network-forming collagens protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network collagenous component of basement membrane collagen type IV trimer complex of collagen trimers extracellular protein-containing complex supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008160	Collagen triple helix repeat	Repeat
A	IPR016187	C-type lectin fold	Homologous Superfamily
A	IPR001442	Collagen IV, non-collagenous	Domain
A	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
A	IPR050149	Collagen superfamily	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P02462	brain small vessel disease 1 with or without ocular anomalies porencephaly retinal arterial tortuosity autosomal dominant familial hematuria-retinal arteriolar tortuosity-contractures syndrome nephrotic syndrome schizencephaly muscular dystrophy-dystroglycanopathy, type A familial schizencephaly focal segmental glomerulosclerosis Brain small vessel disease with or without ocular anomalies intracerebral hemorrhage cerebrovascular disorder thoracic aortic aneurysm cutaneous lupus erythematosus lung cancer brain small vessel disease 1 with or without ocular anomalies porencephaly retinal arterial tortuosity autosomal dominant familial hematuria-retinal arteriolar tortuosity-contractures syndrome nephrotic syndrome schizencephaly muscular dystrophy-dystroglycanopathy, type A familial schizencephaly focal segmental glomerulosclerosis Brain small vessel disease with or without ocular anomalies intracerebral hemorrhage cerebrovascular disorder thoracic aortic aneurysm cutaneous lupus erythematosus lung cancer dermatomyositis malignant mesothelioma nephrosclerosis oligodendroglioma adrenal cortex carcinoma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor head and neck cancer periodontitis cataract interstitial cystitis primitive neuroectodermal tumor chronic obstructive pulmonary disease large cell medulloblastoma transitional cell carcinoma cystic fibrosis malignant ependymoma malignant pancreatic neoplasm Duchenne muscular dystrophy myocardial infarction esophageal adenocarcinoma osteosarcoma arthrogryposis gastric carcinoma pancreatic intraductal papillary-mucinous carcinoma heart disease peripheral arterial disease breast cancer hydrocephalus psoriasis leukodystrophy subependymal giant cell astrocytoma Crohn disease lung adenocarcinoma ulcerative colitis malignant glioma diabetic kidney disease medulloblastoma Emery-Dreifuss muscular dystrophy nasopharyngeal carcinoma ovarian cancer astrocytic tumor Becker muscular dystrophy glioblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pilocytic astrocytoma breast carcinoma hydrolethalus syndrome juvenile dermatomyositis pterygium congenital muscular dystrophy limb-girdle muscular dystrophy

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.