AF_AFM0RC99F1

Computed structure model of Ras-related protein Rab-5A

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ras-related protein Rab-5A	guanyl nucleotide binding binding nucleoside phosphate binding purine nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides guanyl nucleotide binding binding nucleoside phosphate binding purine nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity protein binding GDP-dissociation inhibitor binding GTP binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding anion binding carbohydrate derivative binding ribonucleotide binding GDP binding G protein activity molecular function regulator activity	cellular component organization regulation of cellular component size regulation of vesicle size biological regulation cellular process cellular component organization or biogenesis regulation of biological quality regulation of endosome size regulation of anatomical structure size localization transport plasma membrane to endosome transport establishment of localization vesicle-mediated transport cellular component organization regulation of cellular component size regulation of vesicle size biological regulation cellular process cellular component organization or biogenesis regulation of biological quality regulation of endosome size regulation of anatomical structure size localization transport plasma membrane to endosome transport establishment of localization vesicle-mediated transport import into cell receptor internalization receptor-mediated endocytosis endocytosis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway cell communication signal transduction Wnt signaling pathway phagocytosis protein localization to endosome protein localization to organelle macromolecule localization protein localization to early endosome intracellular protein localization positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of biological process positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process cellular localization postsynaptic neurotransmitter receptor internalization vesicle-mediated transport in synapse neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis establishment of localization in cell regulation of neuronal synaptic plasticity regulation of synaptic plasticity trans-synaptic signaling regulation of signaling regulation of long-term neuronal synaptic plasticity modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication intracellular transport endosomal transport cell population proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation regulation of localization regulated exocytosis synaptic vesicle cycle synaptic vesicle exocytosis regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of vesicle-mediated transport regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis vesicle organization organelle organization endosome organization endomembrane system organization membrane organization membrane fusion synaptic vesicle endocytosis presynaptic endocytosis synaptic vesicle recycling positive regulation of secretion by cell positive regulation of exocytosis positive regulation of secretion positive regulation of transport establishment of protein localization protein transport intracellular protein transport multicellular organismal process amyloid-beta clearance amyloid-beta clearance by transcytosis transcytosis filopodium assembly regulation of cellular component organization plasma membrane bounded cell projection organization cell projection organization regulation of cell projection organization regulation of cell projection assembly regulation of filopodium assembly plasma membrane bounded cell projection assembly regulation of cellular component biogenesis cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cellular component assembly cell projection assembly regulation of plasma membrane bounded cell projection organization vesicle-mediated transport between endosomal compartments early endosome to late endosome transport	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle cytoplasmic vesicle vesicle endocytic vesicle endosome membrane cytoplasmic side of membrane early endosome early endosome membrane endomembrane system cytoplasmic side of endosome membrane bounding membrane of organelle vesicle membrane cytoplasmic side of early endosome membrane endosome membrane side of membrane cytoplasmic vesicle membrane organelle membrane synapse cell junction glutamatergic synapse phagocytic vesicle phagocytic vesicle membrane endocytic vesicle membrane recycling endosome ruffle cell leading edge perinuclear region of cytoplasm zymogen granule zymogen granule membrane secretory granule secretory vesicle secretory granule membrane cell body neuronal cell body sorting endosome transport vesicle membrane presynapse synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane exocytic vesicle axon plasma membrane postsynaptic endocytic zone membrane synaptic membrane postsynaptic endocytic zone cell periphery postsynapse postsynaptic membrane plasma membrane region presynaptic endosome pigment granule melanosome axon terminus distal axon terminal bouton neuron projection terminus membrane microdomain membrane raft early phagosome nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex lipid droplet

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR005225	Small GTP-binding domain	Domain
A	IPR001806	Small GTPase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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AF_AFM0RC99F1

Computed structure model of Ras-related protein Rab-5A

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage