9Z9C | pdb_00009z9c

Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria gonorrhoeae in complex with NAD (P1 form)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GAPDH-like	8068897	3000043	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X		e9z9cX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
W		e9z9cW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
V		e9z9cV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
U		e9z9cU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
T		e9z9cT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
S		e9z9cS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
R		e9z9cR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
Q		e9z9cQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
P		e9z9cP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
O		e9z9cO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
N		e9z9cN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
M	Aldedh	e9z9cM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Aldedh	ECOD (v295.2)
L		e9z9cL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
K		e9z9cK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
J		e9z9cJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
I		e9z9cI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
H		e9z9cH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
G		e9z9cG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
F	Gp_dh_C	e9z9cF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)
E	Gp_dh_C	e9z9cE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)
D	Gp_dh_C	e9z9cD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)
C	Gp_dh_C	e9z9cC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)
B	Gp_dh_C	e9z9cB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)
A	Gp_dh_C	e9z9cA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gp_dh_C	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Glyceraldehyde-3-phosphate dehydrogenase	oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding NAD binding	monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process metabolic process cellular process primary metabolic process glucose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR020828	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR020830	Glyceraldehyde 3-phosphate dehydrogenase, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR006424	Glyceraldehyde-3-phosphate dehydrogenase, type I	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.