9YX5 | pdb_00009yx5

Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis with MSMEG_0435-MSMEG_0436 bound

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth F],
L [auth O]		PF01039Carboxyl transferase domain (Carboxyl_trans)Carboxyl transferase domain- Family
D [auth G],
E [auth H],
J [auth M],
K [auth N]		PF01039Carboxyl transferase domain (Carboxyl_trans)Carboxyl transferase domain- Family
O [auth V],
R [auth Y]		PF02626Carboxyltransferase domain, subdomain A and B (CT_A_B)Carboxyltransferase domain, subdomain A and B- Family
P [auth W],
S [auth Z]		PF02682Carboxyltransferase domain, subdomain C and D (CT_C_D)Carboxyltransferase domain, subdomain C and D- Family
B [auth E],
M [auth P]		PF13822Acyl-CoA carboxylase epsilon subunit (ACC_epsilon)Acyl-CoA carboxylase epsilon subunit- Family
PF00364Biotin-requiring enzyme (Biotin_lipoyl)Biotin-requiring enzymeThis family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Domain
PF02786Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2)Carbamoyl-phosphate synthase L chain, ATP binding domainCarbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ...Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00988. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. The ATP binding domain (this one) has an ATP-grasp fold.
Domain
PF00289Biotin carboxylase, N-terminal domain (Biotin_carb_N)Biotin carboxylase, N-terminal domainThis domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2]. Domain
PF02785Biotin carboxylase C-terminal domain (Biotin_carb_C)Biotin carboxylase C-terminal domainBiotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in ...Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in this C-terminal domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth F],
L [auth O]		Propionyl-CoA carboxylase beta chain -
D [auth G],
E [auth H],
J [auth M],
K [auth N]		Propionyl-CoA carboxylase beta chain
O [auth V],
R [auth Y]		Allophanate hydrolase subunit 2 - -
P [auth W],
S [auth Z]		Allophanate hydrolase subunit 1 - -
B [auth E],
M [auth P]		Acetyl-/propionyl-coenzyme A carboxylase AccE5 - -
Biotin-dependent acyl-coenzyme A carboxylase alpha3 subunit -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth F],
L [auth O]		IPR011763Acetyl-coenzyme A carboxyltransferase, C-terminalDomain
C [auth F],
L [auth O]		IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
C [auth F],
L [auth O]		IPR011762Acetyl-coenzyme A carboxyltransferase, N-terminalDomain
C [auth F],
L [auth O]		IPR034733Acetyl-coenzyme A carboxylase carboxyl transferase subunit betaDomain
C [auth F],
L [auth O]		IPR051047Acyl-CoA Carboxylase Beta SubunitFamily
D [auth G],
E [auth H],
J [auth M],
K [auth N]		IPR011763Acetyl-coenzyme A carboxyltransferase, C-terminalDomain
D [auth G],
E [auth H],
J [auth M],
K [auth N]		IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
D [auth G],
E [auth H],
J [auth M],
K [auth N]		IPR011762Acetyl-coenzyme A carboxyltransferase, N-terminalDomain
D [auth G],
E [auth H],
J [auth M],
K [auth N]		IPR034733Acetyl-coenzyme A carboxylase carboxyl transferase subunit betaDomain
D [auth G],
E [auth H],
J [auth M],
K [auth N]		IPR051047Acyl-CoA Carboxylase Beta SubunitFamily
O [auth V],
R [auth Y]		IPR003778Carboxyltransferase domain, subdomain A and BDomain
O [auth V],
R [auth Y]		IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
O [auth V],
R [auth Y]		IPR0527085-oxoprolinase subunit CFamily
P [auth W],
S [auth Z]		IPR003833Carboxyltransferase domain, subdomain C and DDomain
P [auth W],
S [auth Z]		IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
P [auth W],
S [auth Z]		IPR0100165-oxoprolinase subunit BFamily
B [auth E],
M [auth P]		IPR032716Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase epsilon subunitFamily
IPR005481Biotin carboxylase-like, N-terminal domainDomain
IPR011761ATP-grasp foldDomain
IPR011764Biotin carboxylation domainDomain
IPR013815ATP-grasp fold, subdomain 1Homologous Superfamily
IPR050856Biotin-dependent Carboxylase ComplexFamily
IPR005479Carbamoyl phosphate synthase, ATP-binding domainDomain
IPR005482Biotin carboxylase, C-terminalDomain
IPR016185Pre-ATP-grasp domain superfamilyHomologous Superfamily
IPR011054Rudiment single hybrid motifHomologous Superfamily
IPR011053Single hybrid motifHomologous Superfamily
IPR001882Biotin-binding siteBinding Site
IPR000089Biotin/lipoyl attachmentDomain