9YOQ | pdb_00009yoq

Core module of ctSAGA


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth K]PF07524Bromodomain associated (Bromo_TP)Bromodomain associatedThis domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. Domain
H [auth I]PF03847Transcription initiation factor TFIID subunit A (TFIID_20kDa)Transcription initiation factor TFIID subunit ADomain
F [auth G]PF03540Transcription initiation factor TFIID 23-30kDa subunit (TAF10)Transcription initiation factor TFIID 23-30kDa subunit- Family
PF07571TAF6 C-terminal HEAT repeat domain (TAF6_C)TAF6 C-terminal HEAT repeat domain- Repeat
PF02969TATA box binding protein associated factor (TAF) (TAF)TATA box binding protein associated factor (TAF)TAF proteins adopt a histone-like fold. Domain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF12090Spt20, SEP domain (Spt20_SEP)Spt20, SEP domainThis is the SEP domain found in Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large complex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the ...This is the SEP domain found in Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large complex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains [1]. Spt20 is indispensable under endoplasmic reticulum (ER) stress conditions, being involved in the regulation of stress-responsive genes transcription. This domain interacts with LisH motif helices of Taf5 [2,3].
Domain
K [auth F]PF02291Transcription initiation factor IID, 31kD subunit (TFIID-31kDa)Transcription initiation factor IID, 31kD subunitThis family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation. Domain
PF02259FAT domain (FAT)FAT domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth K]Putative transcriptional activator protein
H [auth I]Transcription initiation factor TFIID subunit 12
G [auth H]Putative transcriptional coactivator HFI1 protein
F [auth G]Transcription initiation factor TFIID subunit 10
Transcription initiation factor TFIID subunit 6
Transcription initiation factor TFIID subunit 5
Uncharacterized protein
Spt20-like SEP domain-containing protein
K [auth F]Putative transcription initiation factor
J [auth Q]SCA7 domain-containing protein-
Non-specific serine/threonine protein kinase-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth K]IPR009072Histone-foldHomologous Superfamily
I [auth K]IPR006565Bromodomain associated domainDomain
I [auth K]IPR018359Bromodomain, conserved siteConserved Site
I [auth K]IPR001487BromodomainDomain
I [auth K]IPR036427Bromodomain-like superfamilyHomologous Superfamily
I [auth K]IPR037782Transcriptional activator Spt7Family
H [auth I]IPR009072Histone-foldHomologous Superfamily
H [auth I]IPR037794Transcription initiation factor TFIID subunit 12Family
H [auth I]IPR003228Transcription initiation factor TFIID subunit 12 domainDomain
G [auth H]IPR024738Transcriptional coactivator Hfi1/Transcriptional adapter 1Family
F [auth G]IPR003923Transcription initiation factor TFIID, subunit 10Family
IPR009072Histone-foldHomologous Superfamily
IPR011442TAF6, C-terminal HEAT repeat domainDomain
IPR037796Transcription initiation factor TFIID subunit 6Family
IPR046344TAF6, C-terminal HEAT repeat domain superfamilyHomologous Superfamily
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001680WD40 repeatRepeat
IPR007582TFIID subunit TAF5, NTD2 domainDomain
IPR019775WD40 repeat, conserved siteConserved Site
IPR037264TFIID subunit TAF5, NTD2 domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR006594LIS1 homology motifConserved Site
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR009072Histone-foldHomologous Superfamily
IPR003195Transcription initiation factor IID, subunit 13Family
IPR021950Transcription factor Spt20Family
IPR046468Spt20-like, SEP domainDomain
K [auth F]IPR051431Transcription initiation factor TFIID subunit 9Family
K [auth F]IPR003162Transcription initiation factor TAFII31Family
J [auth Q]IPR013243SCA7 domainDomain
J [auth Q]IPR037804SAGA-associated factor 73Family
IPR016024Armadillo-type foldHomologous Superfamily
IPR050517DNA Damage Response and Repair KinaseFamily
IPR003152FATC domainDomain
IPR003151PIK-related kinase, FATDomain
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR046805Tra1, HEAT repeat ring regionRepeat
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
IPR046807Tra1, HEAT repeat central regionRepeat
IPR014009PIK-related kinase, FAT domainDomain