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 9YDB | pdb_00009ydb

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth LD]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
E [auth LD]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
G [auth LF]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
G [auth LF]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
G [auth LF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth LG]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
H [auth LG]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
H [auth LG]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
I [auth LH]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
I [auth LH]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth LI]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
K [auth LJ]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth LJ]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
L [auth LK]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
L [auth LK]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
M [auth LL]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
M [auth LL]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
N [auth LM]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein familyDomain
N [auth LM]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
O [auth LN]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
O [auth LN]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
P [auth LO]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
P [auth LO]PF00467KOW motif (KOW)KOW motif- Family
Q [auth LP]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
R [auth LQ]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
R [auth LQ]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
S [auth LR]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
S [auth LR]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
T [auth LS]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
U [auth LT]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
U [auth LT]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
V [auth LU]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
Y [auth LX]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
Z [auth LY]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
AA [auth LZ]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
SA [auth X]PF01912eIF-6 family (eIF-6)eIF-6 familyThis family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Domain
TA [auth W]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
UA [auth V]PF21192NMD3 OB-fold domain (OB_NMD3)NMD3 OB-fold domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 whi ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 which adopts an OB-fold [1]. The OB of Nmd3 does not recognise 25S rRNA. Instead it interacts with two ribosomal proteins, eL42 and uL1 [1].
Domain
UA [auth V]PF04981NMD3, second domain (NMD3)NMD3, second domainThe NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p ...The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [1]. This entry represents the second domain which may adopt a fold similar to that in TolB_N superfamily.
Domain
UA [auth V]PF21193NMD3 SH3 domain (NMD_SH3)NMD3 SH3 domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 wh ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 which adopts an SH3-fold denoted as RBDII in [1]. The two short alpha-helices in RBDII participate in rRNA recognition [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
25S RNA---
8S RNA---
D [auth z]Cytoplasmic 60S subunit biogenesis factor REH1
E [auth LD]60S ribosomal protein L2-A
F [auth LE]60S ribosomal protein L3
G [auth LF]60S ribosomal protein L4-A
H [auth LG]60S ribosomal protein L5
I [auth LH]Large ribosomal subunit protein eL6B
J [auth LI]60S ribosomal protein L7-A
K [auth LJ]60S ribosomal protein L8-A
L [auth LK]60S ribosomal protein L9-A
M [auth LL]Large ribosomal subunit protein uL16
N [auth LM]Large ribosomal subunit protein uL5B
O [auth LN]60S ribosomal protein L13-A
P [auth LO]60S ribosomal protein L14-A
Q [auth LP]60S ribosomal protein L15-A
R [auth LQ]60S ribosomal protein L16-A
S [auth LR]60S ribosomal protein L17-A
T [auth LS]60S ribosomal protein L18-A
U [auth LT]60S ribosomal protein L19-A
V [auth LU]60S ribosomal protein L20-A
W [auth LV]60S ribosomal protein L21-A
X [auth LW]60S ribosomal protein L22-A
Y [auth LX]60S ribosomal protein L23-A
Z [auth LY]60S ribosomal protein L24-A
AA [auth LZ]60S ribosomal protein L25
BA [auth La]60S ribosomal protein L26-A
CA [auth Lb]60S ribosomal protein L27-A
DA [auth Lc]60S ribosomal protein L28
EA [auth Ld]60S ribosomal protein L29
FA [auth Le]60S ribosomal protein L30
GA [auth Lf]60S ribosomal protein L31-A
HA [auth Lg]60S ribosomal protein L32
IA [auth Lh]60S ribosomal protein L33-A
KA [auth Lj]60S ribosomal protein L35-A
LA [auth Lk]60S ribosomal protein L36-A
MA [auth Ll]60S ribosomal protein L37-A
NA [auth Lm]60S ribosomal protein L38
OA [auth Ln]60S ribosomal protein L39
QA [auth Lq]60S ribosomal protein L42-A
RA [auth Lr]60S ribosomal protein L43-A
SA [auth X]Eukaryotic translation initiation factor 6
TA [auth W]Large subunit GTPase 1
UA [auth V]60S ribosomal export protein NMD3
PA [auth Lo]Ubiquitin-60S ribosomal protein L40
JA [auth Li]60S ribosomal protein L34-A
5S RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth z]IPR040025Zinc finger protein 622/Rei1/Reh1Family
D [auth z]IPR041661ZN622/Rei1/Reh1, zinc finger C2H2-typeDomain
E [auth LD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth LD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth LD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth LD]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth LD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth LD]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth LD]IPR002171Large ribosomal subunit protein uL2Family
F [auth LE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth LE]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth LE]IPR000597Large ribosomal subunit protein uL3Family
F [auth LE]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
F [auth LE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth LF]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth LF]IPR002136Large ribosomal subunit protein uL4Family
G [auth LF]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
G [auth LF]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
G [auth LF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth LG]IPR057268Large ribosomal subunit protein uL18Family
H [auth LG]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
H [auth LG]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
I [auth LH]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
I [auth LH]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth LH]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
I [auth LH]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth LH]IPR000915Large ribosomal subunit protein eL6Family
J [auth LI]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth LI]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
J [auth LI]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
J [auth LI]IPR039699Large ribosomal subunit protein uL30Family
J [auth LI]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
J [auth LI]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
J [auth LI]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
K [auth LJ]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
K [auth LJ]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth LJ]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
K [auth LJ]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth LJ]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth LJ]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
L [auth LK]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth LK]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth LK]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth LK]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth LL]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth LL]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
M [auth LL]IPR047873Large ribosomal subunit protein uL16Family
M [auth LL]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
M [auth LL]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth LM]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth LM]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth LM]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth LM]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
N [auth LM]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth LM]IPR002132Large ribosomal subunit protein uL5Family
O [auth LN]IPR001380Large ribosomal subunit protein eL13Family
O [auth LN]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
P [auth LO]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth LO]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth LO]IPR039660Large ribosomal subunit protein eL14Family
P [auth LO]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth LO]IPR005824KOWDomain
Q [auth LP]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth LP]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth LP]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth LP]IPR000439Large ribosomal subunit protein eL15Family
R [auth LQ]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth LQ]IPR005822Large ribosomal subunit protein uL13Family
R [auth LQ]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth LQ]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
S [auth LR]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth LR]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
S [auth LR]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth LR]IPR001063Large ribosomal subunit protein uL22Family
T [auth LS]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth LS]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
T [auth LS]IPR000039Large ribosomal subunit protein eL18Family
T [auth LS]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth LT]IPR039547Large ribosomal subunit protein eL19Family
U [auth LT]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth LT]IPR057260Ribosomal protein L19e, C-terminal domainDomain
U [auth LT]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
U [auth LT]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth LT]IPR057259Ribosomal protein L19e, N-terminal domainDomain
U [auth LT]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth LT]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth LU]IPR028877Large ribosomal subunit protein eL20Family
V [auth LU]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth LU]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
W [auth LV]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth LV]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth LV]IPR001147Large ribosomal subunit protein eL21Family
W [auth LV]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth LW]IPR002671Large ribosomal subunit protein eL22Family
X [auth LW]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth LX]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth LX]IPR000218Large ribosomal subunit protein uL14Family
Y [auth LX]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Z [auth LY]IPR056366Large ribosomal subunit protein eL24Family
Z [auth LY]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
Z [auth LY]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Z [auth LY]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AA [auth LZ]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
AA [auth LZ]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth LZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth LZ]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AA [auth LZ]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
BA [auth La]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
BA [auth La]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
BA [auth La]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth La]IPR005824KOWDomain
BA [auth La]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth La]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
CA [auth Lb]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
CA [auth Lb]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
CA [auth Lb]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth Lb]IPR001141Large ribosomal subunit protein eL27Family
CA [auth Lb]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
DA [auth Lc]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth Lc]IPR030878Large ribosomal subunit protein uL15Family
DA [auth Lc]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
DA [auth Lc]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth Ld]IPR002673Large ribosomal subunit protein eL29Family
FA [auth Le]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
FA [auth Le]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FA [auth Le]IPR039109Large ribosomal subunit protein eL30-likeFamily
FA [auth Le]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GA [auth Lf]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
GA [auth Lf]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GA [auth Lf]IPR000054Large ribosomal subunit protein eL31Family
HA [auth Lg]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HA [auth Lg]IPR001515Large ribosomal subunit protein eL32Family
HA [auth Lg]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IA [auth Lh]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IA [auth Lh]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth Lh]IPR001780Large ribosomal subunit protein eL33Family
IA [auth Lh]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
KA [auth Lj]IPR001854Large ribosomal subunit protein uL29Family
KA [auth Lj]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
KA [auth Lj]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
KA [auth Lj]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
LA [auth Lk]IPR000509Large ribosomal subunit protein eL36Family
LA [auth Lk]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
MA [auth Ll]IPR001569Large ribosomal subunit protein eL37Family
MA [auth Ll]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
MA [auth Ll]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth Ll]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth Lm]IPR002675Large ribosomal subunit protein eL38Family
NA [auth Lm]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
OA [auth Ln]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OA [auth Ln]IPR000077Large ribosomal subunit protein eL39Family
OA [auth Ln]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
QA [auth Lq]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
QA [auth Lq]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth Lq]IPR000552Large ribosomal subunit protein eL42Family
RA [auth Lr]IPR002674Large ribosomal subunit protein eL43Family
RA [auth Lr]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth Lr]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth Lr]IPR050522Eukaryotic ribosomal protein eL43Family
SA [auth X]IPR002769Translation initiation factor IF6Family
TA [auth W]IPR043358Ras GTPase GNL1-likeFamily
TA [auth W]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
TA [auth W]IPR006073GTP binding domainDomain
TA [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth V]IPR063586NMD3-like, N-terminal domainDomain
UA [auth V]IPR007064Nmd3, N-terminalDomain
UA [auth V]IPR039768Ribosomal export protein Nmd3Family
UA [auth V]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
UA [auth V]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
PA [auth Lo]IPR019954Ubiquitin conserved siteConserved Site
PA [auth Lo]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
PA [auth Lo]IPR000626Ubiquitin-like domainDomain
PA [auth Lo]IPR019956Ubiquitin domainDomain
PA [auth Lo]IPR050158Ubiquitin and ubiquitin-likeFamily
PA [auth Lo]IPR001975Large ribosomal subunit protein eL40 domainDomain
PA [auth Lo]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
JA [auth Li]IPR008195Large ribosomal subunit protein eL34Family
JA [auth Li]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
JA [auth Li]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site