9YC8 | pdb_00009yc8

Leucine Rich Repeat Kinase 2 activate state (Apo ROC state 1)

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF08477Ras of Complex, Roc, domain of DAPkinase (Roc)Ras of Complex, Roc, domain of DAPkinaseRoc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains ...Roc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (Pfam:PF00036) that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis [1,2,3,4].
Domain
A [auth B]PF25497C-terminal of Roc, COR-B domain (COR-B)C-terminal of Roc, COR-B domainThe C-terminal of Roc domain, COR, along with Roc functions as the putative regulator of kinase activity. It functions as a proper GTP-binding protein with a low GTPase activity somehow stimulating the kinase activity [1]. COR is divided in two subdo ...The C-terminal of Roc domain, COR, along with Roc functions as the putative regulator of kinase activity. It functions as a proper GTP-binding protein with a low GTPase activity somehow stimulating the kinase activity [1]. COR is divided in two subdomains: COR-A and COR-B. This entry corresponds to COR-B, located at the C-terminal of COR. COR-B serves as the main dimerisation interface in the full-length LRRK2 structure [3]. It interacts with the kinase domain, which is essential for LRRK2 kinase activity [2]. COR-B consists of four flanked helices, a central seven-stranded antiparallel sheet, and a hairpin motif [3].
Domain
A [auth B]PF23748LRRK2 beta propeller (Beta-prop_LRRK2)LRRK2 beta propeller- Repeat
A [auth B]PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]Leucine-rich repeat serine/threonine-protein kinase 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR032171C-terminal of Roc, COR-A domainDomain
A [auth B]IPR016024Armadillo-type foldHomologous Superfamily
A [auth B]IPR000719Protein kinase domainDomain
A [auth B]IPR020859Roc domainDomain
A [auth B]IPR017441Protein kinase, ATP binding siteBinding Site
A [auth B]IPR056597LRRK2, ARM repeat domainDomain
A [auth B]IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
A [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth B]IPR056593LRRK2, ANK repeat domainDomain
A [auth B]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
A [auth B]IPR008271Serine/threonine-protein kinase, active siteActive Site
A [auth B]IPR051420Ser/Thr Protein Kinases with Diverse Regulatory RolesFamily
A [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth B]IPR001611Leucine-rich repeatRepeat
A [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth B]IPR056602LRRK2, beta-propellerDomain
A [auth B]IPR003591Leucine-rich repeat, typical subtypeRepeat
A [auth B]IPR011989Armadillo-like helicalHomologous Superfamily
A [auth B]IPR005225Small GTP-binding domainDomain
A [auth B]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth B]IPR057263C-terminal of Roc, COR-B domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth B]:  Q5S007