9Y9Z | pdb_00009y9z

Cryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GM [auth L9]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
ZL [auth L2]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
YL [auth L1]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
XL [auth L0]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
WL [auth K9]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
VL [auth K8]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
UL [auth K7]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
TL [auth K6]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
SL [auth K5]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
RL [auth K4]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
QL [auth K3]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
PL [auth K2]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
OL [auth K1]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
NM [auth M7]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
NL [auth K0]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
MM [auth M6]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
LM [auth M5]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
KM [auth M4]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
JM [auth M3]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
IM [auth M2]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
HM [auth M1]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
FM [auth L8]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
EM [auth L7]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
DM [auth L6]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
CM [auth L5]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
BM [auth L4]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)
AM [auth L3]SCOP2B SuperfamilyDoublecortin (DC) 8062615 3000670 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16531Centriolar protein SAS N-terminal domain (SAS-6_N)Centriolar protein SAS N-terminal domainThis entry represents the N-terminal domain of the SAS-6 centriolar protein, both in C.elegans and in humans. The N-terminal domain is the region through which the 9 rod-shaped homodimers that SAS-6 forms on oligomerisation interact with each other. ...This entry represents the N-terminal domain of the SAS-6 centriolar protein, both in C.elegans and in humans. The N-terminal domain is the region through which the 9 rod-shaped homodimers that SAS-6 forms on oligomerisation interact with each other. Proper functioning of the centriole requires this correct oligomerisation [1].
Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
PF03607Doublecortin (DCX)Doublecortin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
CF3, TGME49_255895- - -
CF4, TGME49_246720- - -
CF6, TGME49_245640- - -
CIP3, TGME49_225020- - -
Spindle assembly abnormal protein 6 N-terminal domain-containing protein- - -
Tubulin beta chain
Tubulin alpha chain
CF1, TGME49_222350- - -
DCX, TGME49_256030
CF5, TGME49_297180- - -
PRP, TGME49_291880- - -
RI [auth C1],
SI [auth C2],
TI [auth C3],
UI [auth C4],
VI [auth C5]
Microtubule associated protein SPM1 -
CPH1, TGME49_266630- - -
CF2, TGME49_258090

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038558SAS-6, N-terminal domain superfamilyHomologous Superfamily
IPR032396Spindle assembly abnormal protein 6, N-terminalDomain
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR002453Beta tubulinFamily
IPR013838Beta tubulin, autoregulation binding siteBinding Site
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR002452Alpha tubulinFamily
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR003533Doublecortin domainDomain
IPR008907Tubulin polymerization-promoting proteinFamily
IPR036572Doublecortin domain superfamilyHomologous Superfamily
IPR036865CRAL-TRIO lipid binding domain superfamilyHomologous Superfamily
RI [auth C1],
SI [auth C2],
TI [auth C3],
UI [auth C4],
VI [auth C5]
IPR033336Stabilizer of axonemal microtubules 1/2Family
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily