9Y8P | pdb_00009y8p

Cryo-EM structure of Thermotoga maritima encapsulin shell

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
YA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
XA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
WA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
VA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
UA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
U [auth T]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
TA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
T [auth S]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
SA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
RA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
QA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
PA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
OA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
NA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
MA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
LA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
KA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
JA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
IA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
HB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
HA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
GB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
GA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
FB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
FA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
EB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
EA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
DB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
DA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
CB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
CA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
BB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
BA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
AB	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
AA	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
A [auth U]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA	Ribosomal_S18	e9y8pZA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Z	Ribosomal_S18	e9y8pZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
YA	Ribosomal_S18	e9y8pYA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Y	Ribosomal_S18	e9y8pY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
XA	Ribosomal_S18	e9y8pXA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
X	Ribosomal_S18	e9y8pX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
WA	Ribosomal_S18	e9y8pWA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
W	Ribosomal_S18	e9y8pW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
VA	Ribosomal_S18	e9y8pVA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
V	Ribosomal_S18	e9y8pV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
UA	Ribosomal_S18	e9y8pUA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
U [auth T]	Ribosomal_S18	e9y8pT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
TA	Ribosomal_S18	e9y8pTA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
T [auth S]	Ribosomal_S18	e9y8pS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
SA	Ribosomal_S18	e9y8pSA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
S [auth R]	Ribosomal_S18	e9y8pR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
RA	Ribosomal_S18	e9y8pRA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
R [auth Q]	Ribosomal_S18	e9y8pQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
QA	Ribosomal_S18	e9y8pQA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Q [auth P]	Ribosomal_S18	e9y8pP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
PA	Ribosomal_S18	e9y8pPA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
P [auth O]	Ribosomal_S18	e9y8pO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
OA	Ribosomal_S18	e9y8pOA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
O [auth N]	Ribosomal_S18	e9y8pN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
NA	Ribosomal_S18	e9y8pNA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
N [auth M]	Ribosomal_S18	e9y8pM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
MA	Ribosomal_S18	e9y8pMA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
M [auth L]	Ribosomal_S18	e9y8pL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
LA	Ribosomal_S18	e9y8pLA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
L [auth K]	Ribosomal_S18	e9y8pK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
KA	Ribosomal_S18	e9y8pKA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
K [auth J]	Ribosomal_S18	e9y8pJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
JA	Ribosomal_S18	e9y8pJA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
J [auth I]	Ribosomal_S18	e9y8pI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
IA	Ribosomal_S18	e9y8pIA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
I [auth H]	Ribosomal_S18	e9y8pH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
HB	Ribosomal_S18	e9y8pHB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
HA	Ribosomal_S18	e9y8pHA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
H [auth G]	Ribosomal_S18	e9y8pG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
GB	Ribosomal_S18	e9y8pGB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
GA	Ribosomal_S18	e9y8pGA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
G [auth F]	Ribosomal_S18	e9y8pF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
FB	Ribosomal_S18	e9y8pFB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
FA	Ribosomal_S18	e9y8pFA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
F [auth E]	Ribosomal_S18	e9y8pE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
EB	Ribosomal_S18	e9y8pEB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
EA	Ribosomal_S18	e9y8pEA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
E [auth D]	Ribosomal_S18	e9y8pD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
DB	Ribosomal_S18	e9y8pDB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
DA	Ribosomal_S18	e9y8pDA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
D [auth C]	Ribosomal_S18	e9y8pC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
CB	Ribosomal_S18	e9y8pCB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
CA	Ribosomal_S18	e9y8pCA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
C [auth B]	Ribosomal_S18	e9y8pB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
BB	Ribosomal_S18	e9y8pBB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
BA	Ribosomal_S18	e9y8pBA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
B [auth A]	Ribosomal_S18	e9y8pA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
AB	Ribosomal_S18	e9y8pAB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
AA	Ribosomal_S18	e9y8pAA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
A [auth U]	Ribosomal_S18	e9y8pU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth U], AA, AB, B [auth A], BA, A [auth U], AA, AB, B [auth A], BA, BB, C [auth B], CA, CB, D [auth C], DA, DB, E [auth D], EA, EB, F [auth E], FA, FB, G [auth F], GA, GB, H [auth G], HA, HB, I [auth H], IA, J [auth I], JA, K [auth J], KA, L [auth K], LA, M [auth L], MA, N [auth M], NA, O [auth N], OA, P [auth O], PA, Q [auth P], QA, R [auth Q], RA, S [auth R], SA, T [auth S], TA, U [auth T], UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA	PF04454	Encapsulating protein for peroxidase (Linocin_M18)	Encapsulating protein for peroxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth U], AA, AB, B [auth A], BA, A [auth U], AA, AB, B [auth A], BA, BB, C [auth B], CA, CB, D [auth C], DA, DB, E [auth D], EA, EB, F [auth E], FA, FB, G [auth F], GA, GB, H [auth G], HA, HB, I [auth H], IA, J [auth I], JA, K [auth J], KA, L [auth K], LA, M [auth L], MA, N [auth M], NA, O [auth N], OA, P [auth O], PA, Q [auth P], QA, R [auth Q], RA, S [auth R], SA, T [auth S], TA, U [auth T], UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA	Type 1 encapsulin shell protein	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth U], AA, AB, B [auth A], BA, A [auth U], AA, AB, B [auth A], BA, BB, C [auth B], CA, CB, D [auth C], DA, DB, E [auth D], EA, EB, F [auth E], FA, FB, G [auth F], GA, GB, H [auth G], HA, HB, I [auth H], IA, J [auth I], JA, K [auth J], KA, L [auth K], LA, M [auth L], MA, N [auth M], NA, O [auth N], OA, P [auth O], PA, Q [auth P], QA, R [auth Q], RA, S [auth R], SA, T [auth S], TA, U [auth T], UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA	IPR007544	Type 1 encapsulin shell protein	Family
A [auth U], AA, AB, B [auth A], BA, A [auth U], AA, AB, B [auth A], BA, BB, C [auth B], CA, CB, D [auth C], DA, DB, E [auth D], EA, EB, F [auth E], FA, FB, G [auth F], GA, GB, H [auth G], HA, HB, I [auth H], IA, J [auth I], JA, K [auth J], KA, L [auth K], LA, M [auth L], MA, N [auth M], NA, O [auth N], OA, P [auth O], PA, Q [auth P], QA, R [auth Q], RA, S [auth R], SA, T [auth S], TA, U [auth T], UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA	IPR051429	Encapsulin nanocompartment	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.